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Report for CCDS29170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29170.1 Public Mus musculus 18 Pcdhb2 23 108 98 CCDS HistoryNCBI Gene:93873Re-query CCDS DB by CCDS ID:29170.1Re-query CCDS DB by GeneID:93873See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056522.4 ENSMUSP00000057921.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056522.4Link to Ensembl Protein Viewer:ENSMUSP00000057921.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056522Re-query CCDS DB by Protein ID:ENSMUSP00000057921
Original member Current member NCBI NM_053127.2 NP_444357.1 Accepted alive Link to Nucleotide Sequence:NM_053127.2Link to Protein Sequence:NP_444357.1Re-query CCDS DB by Nucleotide ID:NM_053127Re-query CCDS DB by Protein ID:NP_444357Link to BLAST:NP_444357.1

Chromosomal Locations for CCDS 29170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37294976 37297375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGAGGCTGGAGAGGAAATGGAGCAAATCCTGAAAAAAAGGCAAGTCCTGCTGTTCTTTGTTTTGCTGG
GCATAGCTCAGGCTGGGTCCACAATTAGGCGCTATTCCGTGGAGGAGGAAGCAGAGAACGGTGTTTTTGT
GGCAAATTTGTTAAAGGACCTGGGGCTGGAGGTAGAGGAACTCGCTGCACGGGGACCGCGAGTCATTTCC
AAAGGGAAAAAATTGAACTTAGAATTCAATAGGCAAACAGGAGATTTGTTGTTAAGGGAGAAACTGGACC
GGGAGGAGCTGTGTGGACCTGCTGAACCCTGTGTGGTACCTTTCCAGGTGTTACTGGGAAATCCTTTGCA
GATTTTTCAGGCTGAGCTACAGATTAGGGACATAAATGATCATTCTCCCGTTTTTCTGGACAAAGAAATT
ACTTTGAAAATTTCAGAAAGTACTGCTTCCGGTACCACTTTCCTAATAGAACGTGCTCAAGACTTAGATG
TAGGAAGCAACGGTCTCCAAACTTACACAATCAACCCCAATTTCTATTTTCATCTTAATCTACAAAACAG
TCCTGATGGCACAGTATTGCCACAGCTGGTTCTGGACAAAGTGCTGGATCGGGAGGAGCGATCAGAAATC
AGATTAATACTCACAGCTCTAGATGGTGGGAATCCACCCAGGTCTGGCACCGTCCAAATCCTTATTGAAG
TCTTAGACATCAATGACAATGCCCCGGTGTTTTCAAAGCTTCGCTATGAGGTTCAGATCCCAGAGAACAG
TCCTGTTGGATCCCAGGTTGCTACTGTCTCTGCTAGGGATTTAGACATTGGGGACCATGGAAATATAGCT
TACGCCTTTTCCCAAGCCTCTGAAGACATTCGGAAAACGTTTCGAATGAATGCAACATCCGGAGAAATCC
TTTTAGTAAAGACACTGGATTTTGAATCCATCCAGGCATATACAATATGTGTTCAGGCTACAGATGGTGG
GGGACTTTCTGGAAGCAGTGTGGTGATTGTTCAAGTAATGGATTTGAATGACAACCCTCCAGAACTGACT
ATGTCCACATTTACCAATCACATCCCAGAAAACGCCCCGGAAACCGTAATTGCTGTGTTTAGTGTTGCAG
ATTCTGACTCTGGAGACAATGGAAAAATGGTTTGCTCCATCCAAGAAGATCTTCCTTTTATTCTAAAACC
CTCATTTGAGAACTTTTACACTCTTATGACAAACACAGCCCTGGATCGAGAGACCAGATCACAGTACAAC
ATCACTATCATGGTCTCAGACCTGGGCACACCCAGGCTAACAGCTCAGCACACCATAATAGTACAGGTGT
CTGACATCAACGACAACGCCCCCGCCTTCACCCAAACCTCCTATACCATATTTGTCCGAGAAAACAACAG
CCCTGCCCTGCACATAGGCACCATCAGTGCCACAGATTCAGACTCAGGCTCTAATGCCCACATCACCTAC
TCGCTGCTGCCGCCCCAAGACCCACAGTTGGCCCTCCATTCCCTGGTCTCCATCAATGCAGACAACGGGC
AGCTGTTCGCGCTCAGGGCGCTGGACTACGAGGACCAGCAGACCTTCAAGTTCCATGTGGGCGCCACAGA
TGGAGGATCACCGGCACTCAGCAGCCAGACTCTGGTGCGTGTGGTGGTGCTGGATGACAATGATAATGCG
CCCTTCGTGCTCTACCCACTACAGAACTCTTCTGTGCCCTGCACTGAGCTGCTGCCCAGGGCGGCAGAGC
CCGGATACCTAGTCACCAAGGTGGTGGCAGTGGACCGCGACTCTGGCCAGAATGCCTGGTTGTCATTCCA
GCTGCTCAAGGCCACGGAGCCCGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGG
CTGCTGAGTGAGCGAGATGCACCCAAACACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGACCCTCCGC
ATTCTGCCAGCGTCACATTGCAGGTGCTAGTGGTGGATGGCTTCTCTCAACCCTACTTGCCTCTGCCAGA
GGTGGCCCGCGACCCTGCCCAAGATGAGGACATACTAACACTCTACCTGGTCATTGCCTTGGCCTCTGTG
TCTTCTCTCTTCCTCCTGTCTGTACTGCTGTTCGTGGGGGTAAGGCTGTGCAGGAGGGCCAGAGCCACCT
CGCTGGGTGGCTGCTCTATGCCCGAAGGCCACTTTCCAGCCCACCTGGTAGATGTTGGCGGCGCGGGGAC
CCTGTCCCAGAGTTATCAATATGAAGTGTGCCTGACTGGAGATACTGGGACCCCAGATTTCAAGTTCTTG
AAACCAATCATCCCCAATTTCCTCCTTCAGAGTTCAGAGACAGAGAATGATACAAACCCTAGTTACAGGA
ATAGTTTTGAATTCAGTTAA

Translation (799 aa):
MEAGEEMEQILKKRQVLLFFVLLGIAQAGSTIRRYSVEEEAENGVFVANLLKDLGLEVEELAARGPRVIS
KGKKLNLEFNRQTGDLLLREKLDREELCGPAEPCVVPFQVLLGNPLQIFQAELQIRDINDHSPVFLDKEI
TLKISESTASGTTFLIERAQDLDVGSNGLQTYTINPNFYFHLNLQNSPDGTVLPQLVLDKVLDREERSEI
RLILTALDGGNPPRSGTVQILIEVLDINDNAPVFSKLRYEVQIPENSPVGSQVATVSARDLDIGDHGNIA
YAFSQASEDIRKTFRMNATSGEILLVKTLDFESIQAYTICVQATDGGGLSGSSVVIVQVMDLNDNPPELT
MSTFTNHIPENAPETVIAVFSVADSDSGDNGKMVCSIQEDLPFILKPSFENFYTLMTNTALDRETRSQYN
ITIMVSDLGTPRLTAQHTIIVQVSDINDNAPAFTQTSYTIFVRENNSPALHIGTISATDSDSGSNAHITY
SLLPPQDPQLALHSLVSINADNGQLFALRALDYEDQQTFKFHVGATDGGSPALSSQTLVRVVVLDDNDNA
PFVLYPLQNSSVPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTR
LLSERDAPKHRLLLLVKDNGDPPHSASVTLQVLVVDGFSQPYLPLPEVARDPAQDEDILTLYLVIALASV
SSLFLLSVLLFVGVRLCRRARATSLGGCSMPEGHFPAHLVDVGGAGTLSQSYQYEVCLTGDTGTPDFKFL
KPIIPNFLLQSSETENDTNPSYRNSFEFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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