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Report for CCDS29156.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29156.2 Public Mus musculus 18 Sra1 23 108 98 CCDS HistoryNCBI Gene:24068Re-query CCDS DB by CCDS ID:29156.2Re-query CCDS DB by GeneID:24068See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 29156.2
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 12 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29156.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173875.8 ENSMUSP00000133360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173875.8Link to Ensembl Protein Viewer:ENSMUSP00000133360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173875Re-query CCDS DB by Protein ID:ENSMUSP00000133360
Original member Current member NCBI NM_025291.3 NP_079567.2 Accepted alive Link to Nucleotide Sequence:NM_025291.3Link to Protein Sequence:NP_079567.2Re-query CCDS DB by Nucleotide ID:NM_025291Re-query CCDS DB by Protein ID:NP_079567Link to BLAST:NP_079567.2

Chromosomal Locations for CCDS 29156.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36667454 36667659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36667791 36667899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36668652 36668848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36670004 36670129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36670248 36670308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGATGCGCTGCCCCGCTGGCGGTGCGGAAGTGGAGATGGCGGAGCTGTACGTGAAGCCCGGCAACAAGG
AACGCGGCTGGAACGACCCGCCACAATTCTCCTACGGGCTCCAGACTCAGACTGGTGGACCCAAACGCAC
TCCCCTTACTAAGAGGGTCGCGGCCCCACAGGATGGATCCCCTAGAGCCCCAGAAACTTCTGGACCACCT
CCAGTGGATCATCCACCTCCTTCAAGTAAGGCTTCCAGGCCTCCGCCCATGGGGAGCTGTCCTGCTACTG
GTGTGGAGCCCCCAAGTTCCCCAGTCATTGAGTCTGAAACTCTGATAGAAGACGTGCTGAGACCTCTGGA
ACAGGCATTGGAGGACTGCCATGGTCACACAAAGAAACAGGTATGTGATGATATCAGCCGACGCTTGGCG
CTGCTTCGAGAACAGTGGGCTGGAGGGAAGTTGTCAATACCTGTAAAGAAGAGGATGGCACTGCTAGTGC
AAGAACTTTTACATCACCAGTGGGATGCAGCAGATGACATTCACCGATCACTCATGGTTGACCATGTGAC
TGAGGTCAGTCAGTGGATGGTGGGAGTAAAAAGATTAATTGCAGAAAAGAAGAGTCTATCTTCAGAGGAG
ACCAAAGAAGAGAAATTTACAGTGGAACCTGAGAACCAGACAATACCAGGCTTCCAACAGCCATCATAA

Translation (232 aa):
MMRCPAGGAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQTGGPKRTPLTKRVAAPQDGSPRAPETSGPP
PVDHPPPSSKASRPPPMGSCPATGVEPPSSPVIESETLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLA
LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAEKKSLSSEE
TKEEKFTVEPENQTIPGFQQPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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