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Report for CCDS29131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29131.1 Public Mus musculus 18 Kif20a 23 108 98 CCDS HistoryNCBI Gene:19348Re-query CCDS DB by CCDS ID:29131.1Re-query CCDS DB by GeneID:19348See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167161.8 ENSMUSP00000130045.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167161.8Link to Ensembl Protein Viewer:ENSMUSP00000130045.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167161Re-query CCDS DB by Protein ID:ENSMUSP00000130045
Original member Current member EBI ENSMUST00000166044.2 ENSMUSP00000132659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166044.2Link to Ensembl Protein Viewer:ENSMUSP00000132659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166044Re-query CCDS DB by Protein ID:ENSMUSP00000132659
Original member Current member EBI ENSMUST00000237407.1 ENSMUSP00000157839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237407.1Link to Ensembl Protein Viewer:ENSMUSP00000157839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237407Re-query CCDS DB by Protein ID:ENSMUSP00000157839
Original member Current member NCBI NM_001166406.1 NP_001159878.1 Accepted alive Link to Nucleotide Sequence:NM_001166406.1Link to Protein Sequence:NP_001159878.1Re-query CCDS DB by Nucleotide ID:NM_001166406Re-query CCDS DB by Protein ID:NP_001159878Link to BLAST:NP_001159878.1
Original member Current member NCBI NM_001166407.1 NP_001159879.1 Accepted alive Link to Nucleotide Sequence:NM_001166407.1Link to Protein Sequence:NP_001159879.1Re-query CCDS DB by Nucleotide ID:NM_001166407Re-query CCDS DB by Protein ID:NP_001159879Link to BLAST:NP_001159879.1
Original member Current member NCBI NM_009004.4 NP_033030.1 Accepted alive Link to Nucleotide Sequence:NM_009004.4Link to Protein Sequence:NP_033030.1Re-query CCDS DB by Nucleotide ID:NM_009004Re-query CCDS DB by Protein ID:NP_033030Link to BLAST:NP_033030.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159878.1 887 P97329 887 100% 0 0
NP_001159879.1 887 P97329 887 100% 0 0
NP_033030.1 887 P97329 887 100% 0 0

Chromosomal Locations for CCDS 29131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34625480 34625641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34626716 34626805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34626895 34627014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34627553 34627691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34627785 34627972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34628053 34628182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34628385 34628579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34628675 34628786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34628885 34628953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34629141 34629284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34629425 34629590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34630002 34630166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34630287 34630426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34630522 34630624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34631146 34631341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34631521 34631612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34631926 34632063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34632301 34632615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGTCTCACCGGATCCTTTCTCCGCCAGCGGGCTTACTCTCTGATGAGGATGTTGTAGACTCTCCCATAT
TAGAATCCACAGCTGCAGATCTGAGATCTGTTGTCCGAAAGGACCTGTTGTCAGACTGCTCTGTCATCTC
TGCCTCTCTGGAGGACAAGCAGGCTCTACTGGAGGACACCTCAGAGAAGGTGAAAGTTTACCTTCGAATT
CGACCATTCTTGACTTCAGAGTTGGACCGACAGGAAGATCAGGGCTGCGTCTGCATTGAGAATACAGAAA
CCCTTGTGCTGCAGGCACCCAAAGACTCCTTTGCCTTGAAGAGTAATGAGAGGGGAGTTGGTCAGGCCAC
TCACAAATTTACCTTTTCCCAGATATTTGGGCCAGAAGTGGGACAGGTGGCCTTCTTCAATCTGACCATG
AAGGAGATGGTGAAGGATGTGCTCAAAGGGCAGAACTGGCTCATCTACACCTATGGAGTCACCAACTCGG
GGAAAACGTACACCATTCAAGGTACTAGTAAGGATGCGGGGATCCTGCCCCAGTCCCTGGCTCTCATCTT
TAATAGTCTCCAGGGCCAGCTTCATCCGACACCTGACCTGAAGCCCTTATTGTCCAATGAAGTAATCTGG
CTAGACAGCAAGCAGATTCGACAGGAGGAAATGAAGAAGCTGTCCTTGCTAATTGGAGGCCTCCAAGAGG
AGGAGCTGTCCACCTCCGTGAAGAAACGTGTCCACACTGAAAGTCGGATAGGTGCCAGCAACAGCTTTGA
CAGTGGCGTTGCTGGGCTGTCTTCCACCAGTCAGTTCACCAGCAGCAGCCAGCTAGATGAAACAAGTCAA
TTATGGGCACAACCAGACACTGTCCCAGTAAGTGTTCCAGCAGACATTCGCTTCTCTGTCTGGATCTCCT
TCTTTGAGATCTACAATGAATTGCTTTATGACCTGTTAGAACCACCTAGCCATCAGCATAAGAGACAGAC
ACTTCGGCTGTGTGAGGATCAGAACGGCAATCCTTACGTGAAAGATCTCAATTGGATTCATGTTCGTGAT
GTTGAGGAAGCCTGGAAACTATTGAAAGTGGGTCGCAAGAACCAGAGCTTTGCCAGCACCCACATGAACC
AGCAATCCAGCCGCAGTCACAGCATCTTCTCAATCAGAATCTTGCACCTTCAGGGAGAAGGGGATATAGT
GCCCAAGATCAGTGAACTGTCACTCTGTGACCTGGCTGGCTCTGAGCGCTGCAAACATCAAAAAAGTGGT
GAGCGGCTAAAGGAGGCAGGGAACATTAACACTTCTCTGCACACCCTGGGCCGCTGTATTGCTGCCCTGC
GACAGAATCAGCAGAACCGGTCAAAGCAGAACCTGATTCCTTTCCGTGACAGCAAGTTGACTCGTGTGTT
CCAAGGCTTCTTCACAGGTCGAGGTCGTTCCTGTATGATTGTCAATGTGAATCCCTGTGCATCTACATAT
GACGAGACTCTTCATGCAGCCAAATTCTCAGCCCTAGCCAGCCAGCTTGTGCACGCCCCACCTGTGCATC
TGGGAATCCCATCCCTGCATTCATTCATCAAGAAGCACAGTCCTCAGGTTGGCCCTGGCTTAGAGAAAGA
GGACAAGGCCGACTCAGACCTTGAGGACAGTCCTGAAGACGAAGCTGACGTCTCCGTGTATGGCAAGGAG
GAACTACTCCAGGTGGTGGAAGCCATGAAAGCGCTACTTTTAAAAGAACGACAAGAAAAGCTGCAGTTGG
AGATACAGCTCCGAGAGGAAATTTGCAACGAAATGGTGGAACAGATGCAACAGCGGGAGCAGTGGTGCAG
TGAGCGTTTGGACAACCAAAAGGAACTGATGGAGGAACTGTACGAGGAGAAACTGAAGATCCTGAAGGAA
TCACTGACAACTTTCTACCAAGAGCAGATCCAGGAGCGGGATGAAAAAATTGAAGAGCTAGAAACTCTGT
TGCAGGAAGCCAAACAGCAGCCAGCGGCACAACAGTCAGGGGGGCTGTCCCTCCTCCGGCGGTCACAGAG
GCTGGCAGCGTCTGCCTCCACTCAGCAGTTCCAGGAAGTTAAAGCTGAACTAGAGCAATGCAAAACAGAG
TTAAGCTCTACCACTGCAGAGCTGCACAAGTATCAGCAAGTGTTAAAACCGCCACCCCCAGCCAAGCCTT
TCACCATTGATGTGGATAAGAAGTTAGAGGAGGGCCAGAAGAATATAAGACTGCTACGGACAGAGCTCCA
GAAACTAGGACAGTCTCTGCAGTCAGCAGAAAGAGCCTGTTGCCACAGCACCGGAGCAGGAAAACTTCGT
CAAGCATTAACCAACTGTGATGACATCTTAATCAAGCAGAACCAGACCCTGGCTGAGCTGCAGAATAACA
TGGTGCTAGTGAAACTGGACCTTCAGAAAAAGGCAGCCTGCATTGCTGAGCAGTATCACACTGTGCTAAA
GCTCCAAGGCCAAGCCTCTGCCAAAAAGCGGCTGGGAGCAAACCAGGAAAACCAGCAACCAAATCATCAA
CCCCCAGGAAAGAAACCATTCCTGCGAAACTTACTTCCCCGAACACCTACCTGCCAAAGCTCAACAGACA
GCAGCCCTTATGCGCGGATCTTGCGCTCACGGCACTCTCCTTTACTCAAATCTCCCTTTGGCAAAAAATA
CTAA

Translation (887 aa):
MSHRILSPPAGLLSDEDVVDSPILESTAADLRSVVRKDLLSDCSVISASLEDKQALLEDTSEKVKVYLRI
RPFLTSELDRQEDQGCVCIENTETLVLQAPKDSFALKSNERGVGQATHKFTFSQIFGPEVGQVAFFNLTM
KEMVKDVLKGQNWLIYTYGVTNSGKTYTIQGTSKDAGILPQSLALIFNSLQGQLHPTPDLKPLLSNEVIW
LDSKQIRQEEMKKLSLLIGGLQEEELSTSVKKRVHTESRIGASNSFDSGVAGLSSTSQFTSSSQLDETSQ
LWAQPDTVPVSVPADIRFSVWISFFEIYNELLYDLLEPPSHQHKRQTLRLCEDQNGNPYVKDLNWIHVRD
VEEAWKLLKVGRKNQSFASTHMNQQSSRSHSIFSIRILHLQGEGDIVPKISELSLCDLAGSERCKHQKSG
ERLKEAGNINTSLHTLGRCIAALRQNQQNRSKQNLIPFRDSKLTRVFQGFFTGRGRSCMIVNVNPCASTY
DETLHAAKFSALASQLVHAPPVHLGIPSLHSFIKKHSPQVGPGLEKEDKADSDLEDSPEDEADVSVYGKE
ELLQVVEAMKALLLKERQEKLQLEIQLREEICNEMVEQMQQREQWCSERLDNQKELMEELYEEKLKILKE
SLTTFYQEQIQERDEKIEELETLLQEAKQQPAAQQSGGLSLLRRSQRLAASASTQQFQEVKAELEQCKTE
LSSTTAELHKYQQVLKPPPPAKPFTIDVDKKLEEGQKNIRLLRTELQKLGQSLQSAERACCHSTGAGKLR
QALTNCDDILIKQNQTLAELQNNMVLVKLDLQKKAACIAEQYHTVLKLQGQASAKKRLGANQENQQPNHQ
PPGKKPFLRNLLPRTPTCQSSTDSSPYARILRSRHSPLLKSPFGKKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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