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Report for CCDS29110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29110.1 Public Mus musculus 18 Slc25a46 23 108 98 CCDS HistoryNCBI Gene:67453Re-query CCDS DB by CCDS ID:29110.1Re-query CCDS DB by GeneID:67453See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060396.6 ENSMUSP00000053325.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060396.6Link to Ensembl Protein Viewer:ENSMUSP00000053325.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060396Re-query CCDS DB by Protein ID:ENSMUSP00000053325
Original member Current member NCBI NM_026165.4 NP_080441.1 Accepted alive Link to Nucleotide Sequence:NM_026165.4Link to Protein Sequence:NP_080441.1Re-query CCDS DB by Nucleotide ID:NM_026165Re-query CCDS DB by Protein ID:NP_080441Link to BLAST:NP_080441.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080441.1 418 Q9CQS4 418 100% 0 0

Chromosomal Locations for CCDS 29110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31583191 31583769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31594577 31594634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31597039 31597095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31600132 31600232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31602723 31602800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31605753 31605810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31607222 31607264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31609529 31609811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCATCCGCGGCGCCCTGAGGGCTTCGATGGCCTGGGCTACCGGGGAGGCGTTCGGGATGATCCGGCTT
TCGGCGGCCCTTTCCATGCGCGCTCCTTCGGTTCAGGGACGGAACTGGGCCACTGGGTGACGACGCCCCC
GGACATCCCGGGCAGCCGCAACCTGCACTGGGGCGAAAAGAGCCCTTCCTACGGCGTGCCGTCCGCGCCC
CCGACGCTCGAGGGTTCCGCGGAGGAGCCCTTTCCCGGCGGCGGCGAGGGCCCGCGGCCGGGACCGAGCA
GCGAACAGTTGAATAGATTTGCTGGATTTGGTATTGGACTTGCAAGTCTCTTTACAGAAAATGTGCTGGC
CCATCCTTGCATTGTTTTACGCCGCCAGTGTCAGGTCAATTACCATGCTCGGCATTACCATCTCACTCCA
TTTTCAATTATCAACATTATGTATAGCTTCAACAAAACTCAGGGACCAAGAGCCCTATGGAAAGGGATGG
GAAGCACATTTATTGTTCAGGGAGTCACACTTGGAGCAGAAGGCATAATAAGTGAATTTACACCTTTACC
GAGGGAGGTTTCACACAAATTGAACCCTAAACAAATAGGTGAACACCTTCTCCTGAAATGCCTAACATAC
ATGGTGGCCATGCCTTTTTATTCTGCAAGTCTGATCGAAACAGTACAGAGTGAGATAATCCGAGATAACA
CTGGCATTCTGGAATGTGTTAAAGAAGGAATTGGACGAGTGATAGGCTTGGGAGTGCCTCACAGCAAACG
CCTTCTTCCACTGTTTTCATTGATCTTCCCAACAGTGCTGCATGGAGTTCTTCATTACATTATCAGCTCC
ATCATTCAGAAGATTGTCCTTCTAATTCTGAAGAGAAAGACCTATAACAGCCACCTAGCTGAGAGCACTA
GCCCCATGCAGAATATGTTGGATGCCTATTTTCCAGAACTTATTGCGAACTTTGCTGCCAGCCTTTGTTC
TGACGTTATACTTTACCCACTGGAAACAGTTCTGCATCGTCTTCATATTCAAGGAACACGCACAATTATT
GACAACACAGACCTTGGCTACGAAGTACTTCCAATTAATACGCAGTATGAGGGAATGAGAGACTGTATAA
ATACCATAAAGCAGGAGGAAGGAGTGTTTGGTTTCTATAAAGGGTTTGGTGCTGTTATAATACAGTATAC
ACTGCATGCAACCATCTTACAGATTACCAAAATGATTTACTCCACACTTCTTCAGAATAGCATTTGA

Translation (418 aa):
MHPRRPEGFDGLGYRGGVRDDPAFGGPFHARSFGSGTELGHWVTTPPDIPGSRNLHWGEKSPSYGVPSAP
PTLEGSAEEPFPGGGEGPRPGPSSEQLNRFAGFGIGLASLFTENVLAHPCIVLRRQCQVNYHARHYHLTP
FSIINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPLPREVSHKLNPKQIGEHLLLKCLTY
MVAMPFYSASLIETVQSEIIRDNTGILECVKEGIGRVIGLGVPHSKRLLPLFSLIFPTVLHGVLHYIISS
IIQKIVLLILKRKTYNSHLAESTSPMQNMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTII
DNTDLGYEVLPINTQYEGMRDCINTIKQEEGVFGFYKGFGAVIIQYTLHATILQITKMIYSTLLQNSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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