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Report for CCDS29100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29100.1 Public Mus musculus 18 Galnt1 23 108 98 CCDS HistoryNCBI Gene:14423Re-query CCDS DB by CCDS ID:29100.1Re-query CCDS DB by GeneID:14423See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000430.13 ENSMUSP00000000430.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000430.13Link to Ensembl Protein Viewer:ENSMUSP00000000430.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000430Re-query CCDS DB by Protein ID:ENSMUSP00000000430
Original member Current member EBI ENSMUST00000170243.7 ENSMUSP00000132142.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170243.7Link to Ensembl Protein Viewer:ENSMUSP00000132142.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170243Re-query CCDS DB by Protein ID:ENSMUSP00000132142
Original member Current member EBI ENSMUST00000178605.1 ENSMUSP00000137427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178605.1Link to Ensembl Protein Viewer:ENSMUSP00000137427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178605Re-query CCDS DB by Protein ID:ENSMUSP00000137427
Original member Current member NCBI NM_001160404.1 NP_001153876.1 Accepted alive Link to Nucleotide Sequence:NM_001160404.1Link to Protein Sequence:NP_001153876.1Re-query CCDS DB by Nucleotide ID:NM_001160404Re-query CCDS DB by Protein ID:NP_001153876Link to BLAST:NP_001153876.1
Original member Current member NCBI NM_001361200.1 NP_001348129.1 Accepted alive Link to Nucleotide Sequence:NM_001361200.1Link to Protein Sequence:NP_001348129.1Re-query CCDS DB by Nucleotide ID:NM_001361200Re-query CCDS DB by Protein ID:NP_001348129Link to BLAST:NP_001348129.1
Original member Current member NCBI NM_013814.3 NP_038842.3 Accepted alive Link to Nucleotide Sequence:NM_013814.3Link to Protein Sequence:NP_038842.3Re-query CCDS DB by Nucleotide ID:NM_013814Re-query CCDS DB by Protein ID:NP_038842Link to BLAST:NP_038842.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153876.1 559 O08912 559 100% 0 0
NP_001348129.1 559 O08912 559 100% 0 0
NP_038842.3 559 O08912 559 100% 0 0

Chromosomal Locations for CCDS 29100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24238347 24238485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24246050 24246224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24254518 24254684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24264325 24264532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24267528 24267698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24269448 24269565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24271586 24271766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24272662 24272801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24279944 24280042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24282102 24282236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24284710 24284856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGAGAAAATTTGCATATTGCAAGGTGGTTCTAGCCACCTCCTTGGTTTGGGTACTCTTGGATATGTTCC
TGCTGCTTTACTTCAGTGAATGCAACAAATGTGAAGAGAAGCAGGAGAGAGGACTTCCTGCTGGTGACGT
TCTAGAGCTAGTGCAGAAACCTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCGAAAGAG
GATCAAGAAAAGATGAAAGAGATGTTTAAAATCAATCAGTTCAACTTAATGGCAAGTGAGATGATTGCAC
TCAACAGATCCTTACCAGATGTGAGGTTAGAGGGGTGTAAAACAAAGGTGTATCCAGATAACCTTCCTAC
AACAAGTGTGGTGATTGTTTTCCACAATGAGGCATGGAGCACACTTCTGCGAACAGTCCATAGTGTCATT
AATCGCTCGCCAAGACATATGATAGAAGAGATTGTTCTTGTAGATGATGCCAGTGAAAGAGACTTTTTGA
AAAGACCTCTAGAGAGTTATGTGAAAAAACTGAAAGTGCCGGTTCATGTAATTCGAATGGAGCAGCGCTC
TGGGTTGATCAGAGCTAGATTGAAAGGAGCTGCTGTGTCCAGAGGCCAAGTGATCACCTTCTTAGATGCT
CACTGTGAATGCACCGCAGGGTGGCTGGAGCCTCTGTTGGCCCGGATCAAACATGACAGGAGGACAGTGG
TGTGTCCTATCATCGACGTGATCAGTGATGACACTTTCGAGTACATGGCGGGCTCTGACATGACCTATGG
TGGCTTCAACTGGAAGCTCAATTTTCGTTGGTATCCTGTTCCCCAGCGAGAAATGGACAGAAGGAAAGGT
GACAGGACTCTTCCTGTCAGAACACCTACAATGGCTGGAGGCCTTTTTTCAATAGACAGAGATTACTTTC
AGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCATTTAGGAT
TTGGCAGTGTGGAGGAACTTTGGAAATAGTGACATGCTCCCATGTTGGTCATGTGTTTCGGAAAGCTACA
CCTTACACATTTCCAGGAGGGACAGGGCAGATTATCAATAAGAATAACAGGCGGCTTGCAGAAGTATGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATC
ATCAAGACTTGGCCTAAGACGTAAACTACAATGCAAACCTTTCTCTTGGTACCTAGAAAATATTTACCCT
GATTCTCAAATTCCTCGTCACTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAG
ATAACATGGCTAGAAAAGAGAATGAAAAGGTTGGAATCTTTAATTGTCATGGTATGGGAGGTAATCAGGT
TTTCTCCTACACTGCCAACAAAGAAATTAGAACAGACGACCTTTGTTTGGACGTTTCCAAACTTAATGGC
CCAGTCACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGAGTATGACCCAGTGAAATTAA
CCCTGCAGCATGTGAACAGCAATCAGTGCCTGGATAAAGCCACAGAGGAGGACAGCCAGGTGCCCAGCAT
TAGAGACTGCACTGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTTCCAGAAATATTCTGA

Translation (559 aa):
MRKFAYCKVVLATSLVWVLLDMFLLLYFSECNKCEEKQERGLPAGDVLELVQKPHEGPGEMGKPVVIPKE
DQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVI
NRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDA
HCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG
DRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT
PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYP
DSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNG
PVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRSQQWLLRNVTLPEIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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