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Report for CCDS29093.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29093.2 Public Mus musculus 18 Nol4 23 108 98 CCDS HistoryNCBI Gene:319211Re-query CCDS DB by CCDS ID:29093.2Re-query CCDS DB by GeneID:319211See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 29093.1
The coding region has been updated to represent an alternatively spliced transcript variant that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29093.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097651.9 ENSMUSP00000095256.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097651.9Link to Ensembl Protein Viewer:ENSMUSP00000095256.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097651Re-query CCDS DB by Protein ID:ENSMUSP00000095256
Original member Current member NCBI NM_199024.3 NP_950189.2 Accepted alive Link to Nucleotide Sequence:NM_199024.3Link to Protein Sequence:NP_950189.2Re-query CCDS DB by Nucleotide ID:NM_199024Re-query CCDS DB by Protein ID:NP_950189Link to BLAST:NP_950189.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950189.2 483 P60954-1 483 100% 0 0

Chromosomal Locations for CCDS 29093.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 22695120 22695134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22719070 22719156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22751927 22752040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22770681 22770860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22823287 22823570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22912582 22912714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22920815 22920927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22921846 22921957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22952161 22952310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23039779 23040042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGAGAGCGAGCGCGACATGTACCGCCAGTTCCAGGACTGGTGCCTTAGGACTTACGGGGACTCAGGCA
AGACCAAGACGGTGACCCGTAAGAAATATGAGCGGATTGTTCAGCTTCTCAACGGCTCAGAGTCAAGCTC
CACCGACAATGCCAAATTTAAATTCTGGGTCAAATCGAAGGGTTTCCAGCTGGGCCAGCCTGATGAGGTC
CGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGGGTCAAGACCACGGATGGCGTAGGAGTTG
ATGAGAAGCTGTCTTTACGGCGAGTGGCTGTGGTTGAAGATTTCTTTGACATCATCTATTCCATGCATGT
GGAGACAGGGCCGAATGGAGAGCAAATCCGGAAACACGCTGGGCAGAAGAGAACTTACAAAGCAATTTCA
GAGAGCTATGCCTTCCTACCAAGAGAAGCGGTGACACGGTTTCTAATGAGCTGTTCCGAGTGCCAGAAAA
GAATGCACTTGAACCCAGATGGAACGGATCACAAAGATAATGGAAAGCCTCCTACACTGGTGACCAGCAT
GATCGACTACAACATGCCAATCACAATGGCGTACATGAAGCACATGAAACTGCAGCTTCTGAACTCACAG
CAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAATTTGACATGAGTGATTCAACACGAATGTCAGCCG
TGAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCAAGA
TGATGACTCTGCTGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTCAGGGGGA
GCACATGGCAGGGAGCCCGAGGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCAC
TGAACCTGAGTGACAGCCCCAGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGATGACCAAGGCAGTGA
TGGGAAAAACAAGTATAAGAATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGCGAGAGAAAATGGA
AGCAAGTCTCCAGCACACAGCTACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTGATCGAGGTGCAG
AGGATCTGTCACTCAACAGGGGAGATGAAGATGAAGATGAACATGATGAGCATGAGGATTCGGAGAAGGT
GAACGAGACAGATGGTGTGGAAGCTGAGAGGCTGAAAGCTTTCAATTCTCGACCTATTCCCTCCCACCTT
ACTTCAGCAGTTGCAGAGAGTATCTTGGCTTCAGCCTGTGAAAGCGAGAGTAGAAATGCTGCCAAGAGGA
TGCGTCTGGATAAAGCACAGGATGAAGCTGCTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCCAGGC
CACCTACTCAACAGCTACTGTTCCAGGCTCCCAGGAGGACCCACAGATCTGA

Translation (483 aa):
MESERDMYRQFQDWCLRTYGDSGKTKTVTRKKYERIVQLLNGSESSSTDNAKFKFWVKSKGFQLGQPDEV
RGGGGGAKQVLFVRVKTTDGVGVDEKLSLRRVAVVEDFFDIIYSMHVETGPNGEQIRKHAGQKRTYKAIS
ESYAFLPREAVTRFLMSCSECQKRMHLNPDGTDHKDNGKPPTLVTSMIDYNMPITMAYMKHMKLQLLNSQ
QDEDESSIESDEFDMSDSTRMSAVNSDLSSNLEERMQSPQTVHGQQDDDSAAESSNGNETLGHSSAASGG
AHGREPEDSSSDGKTGLEQEEQPLNLSDSPSSAQLTSEFRIDDQGSDGKNKYKNLLISDLKMEREARENG
SKSPAHSYSSYDSGKNESVDRGAEDLSLNRGDEDEDEHDEHEDSEKVNETDGVEAERLKAFNSRPIPSHL
TSAVAESILASACESESRNAAKRMRLDKAQDEAAPADKQCKPEAAQATYSTATVPGSQEDPQI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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