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Report for CCDS29044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29044.1 Public Mus musculus 18 Rab18 23 108 98 CCDS HistoryNCBI Gene:19330Re-query CCDS DB by CCDS ID:29044.1Re-query CCDS DB by GeneID:19330See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234810.1 ENSMUSP00000157011.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234810.1Link to Ensembl Protein Viewer:ENSMUSP00000157011.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234810Re-query CCDS DB by Protein ID:ENSMUSP00000157011
Original member Current member NCBI NM_181070.6 NP_851415.1 Accepted alive Link to Nucleotide Sequence:NM_181070.6Link to Protein Sequence:NP_851415.1Re-query CCDS DB by Nucleotide ID:NM_181070Re-query CCDS DB by Protein ID:NP_851415Link to BLAST:NP_851415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851415.1 206 P35293 206 100% 0 0

Chromosomal Locations for CCDS 29044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 6765265 6765332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6770054 6770109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6778495 6778556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6783120 6783192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6784570 6784688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6784939 6785005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6788480 6788655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGACGAGGACGTGCTGACCACTCTGAAGATACTCATCATCGGCGAGAGTGGGGTGGGCAAGTCCAGCC
TGCTCCTGAGGTTCACAGATGATACCTTTGATCCAGAACTTGCAGCAACAATAGGTGTTGACTTTAAGGT
GAAAACGATTTCAGTGGATGGAAATAAGGCTAAACTTGCAATATGGGATACAGCTGGTCAAGAGAGGTTC
AGAACATTAACTCCCAGCTATTATAGAGGTGCACAGGGAGTTATATTAGTCTATGATGTCACAAGAAGAG
ACACCTTTGTTAAACTGGATAACTGGTTAAATGAATTGGAAACATACTGTACAAGAAATGACATAGTAAA
CATGCTAGTTGGAAATAAAATTGATAAGGAAAACCGTGAAGTCGATAGAAATGAAGGCTTGAAATTTGCA
CGCAAGCATTCTATGTTGTTCATAGAGGCAAGTGCAAAAACCTGTGATGGTGTACAGTGTGCCTTTGAGG
AGCTTGTTGAGAAGATCATTCAGACACCTGGCCTGTGGGAAAGTGAGAACCAGAACAAAGGAGTCAAGCT
GTCACACAGGGAAGAGAGCCGCGGAGGAGGCGCCTGCGGCGGTTACTGCTCTGTGCTATAA

Translation (206 aa):
MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF
RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA
RKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKGVKLSHREESRGGGACGGYCSVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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