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Report for CCDS28961.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28961.2 Public Mus musculus 17 Togaram2 23 108 98 CCDS HistoryNCBI Gene:320159Re-query CCDS DB by CCDS ID:28961.2Re-query CCDS DB by GeneID:320159See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28961.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data and transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28961.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097284.9 ENSMUSP00000094886.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097284.9Link to Ensembl Protein Viewer:ENSMUSP00000094886.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097284Re-query CCDS DB by Protein ID:ENSMUSP00000094886
Original member Current member EBI ENSMUST00000153445.8 ENSMUSP00000122691.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153445.8Link to Ensembl Protein Viewer:ENSMUSP00000122691.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153445Re-query CCDS DB by Protein ID:ENSMUSP00000122691
Original member Current member NCBI NM_177087.4 NP_796061.2 Accepted alive Link to Nucleotide Sequence:NM_177087.4Link to Protein Sequence:NP_796061.2Re-query CCDS DB by Nucleotide ID:NM_177087Re-query CCDS DB by Protein ID:NP_796061Link to BLAST:NP_796061.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796061.2 1002 Q3TYG6-1 1002 100% 0 0

Chromosomal Locations for CCDS 28961.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71685165 71685192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71687586 71687699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71689149 71689436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71690526 71690737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71691446 71691636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71695697 71695743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71697833 71697996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71700505 71700655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71700880 71701044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71704688 71704841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71705779 71705884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71707079 71707314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71709509 71709667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71714236 71714353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71714678 71714772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71716379 71716517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71717250 71717466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71724972 71725058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71729188 71729525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3009 nt):
ATGGACACCCGTGACGATGTCACTCTAGCCAAAGTTCCGGCTCCAGTGGCTGTGTACTGTGGGAGTGTCC
CTCGGACTAGTGTTGGGCTCCGAGCGCCCCCACCTGGAGGCATCGACTCCAGTCTTCTTGCTCACGATGA
AGCCTCTTTGCAGCCAGTGTCAAGTGTACTGCCAAGCAGTGAGAAGCCATCACAGCTCTCAAGGGAACAT
GAGGACCAGAGTAGTCTCATGCTGAATGCTCCTCTGAAAGGCTGGCAGGCCAGGAATGGCTACCCCAGGG
GCCTTGGAGTTCTGCCCTTGGGGCACCACCTGGGGGCAGCTATTCCCTCCCTGGAATCAGAGGCCAGCAG
TGTGGCCCGGGACACGATCCAGATTAAGGACAAACTCAAGAAGAGACGGCTCTCAGAAGGCATGGCGGCA
TCTTCTCAAGCCTCTCTGGATCCGGTGGGAGGCCCCAGAGGGGTTCCTCTGCGGAGCACAATCCCCCGCA
CCACCTCACAGAGGCTCCTGAGGGTACCCAGGCCGATGCCTCCCATCCAGAGCATTCCCACCACCCCTGA
GGCCAACAGTGCTAAGGAGAAGGACCTGGACCCTCCTGGAGGCAGACAGGATCTCCAGGACCCGGGAGCC
AGTGCCCAGGAGGTGCAGATTTCCAGGCAATACTTACACTGCGCTGATGAGAAGATGCACAAGTCTTTAG
GAGGCCTCGTGATCCCACCCATTCCGAAGGCCCGGATGCCCACAGGGACCTCTTCCTGCAGGCCTGGCTC
CTTGCCCAGCCCCCTGTGTCCAAGCCAGGATGTGCTTATGGGACCAAAGGCCCCACATACGCGATTGACT
TGTGAGAATGGGCCTCTGGAAAAGACCCCTAAATCTCCGGCGTCAAAGCCTTTGGTTCCAGTTGTCAAGG
CCAAGTCTGCTGAAGCCCCCGAAACGTCCCTGGCTTCGTCACAGTCTACCTTTACTCTGACAGCATTCTC
CAGTCATGCCAAAGAAACCCGCTCCCTGGAGAACGAAGAAGACCAGAAGGAGTCCAGCACCAAGGTCCAA
GTCACCATTTCCAAGTCTGCCCAGGAAAAGATGAGGCTGAAGCAGATGAAGGAGATGGAGCTGCTTCGGA
GGGCAAAGGAGCCAGAGTGGGAGCGAGAACTGGTTTCCCAGGGCTTAGGCACACGGAGAACCTCAGCAAA
GGAAGGCCTCCTTCCTTTGCGGGGCAGTGGAGCACTGTCCGAGCCTGCTGGGATGAGCAGCCCACGCAGA
AACAACATGGGAGCCCTCCAGAGAAAACGGGCTAACCGAGCCTCCCTGCCCAGCATCCCGGTCAGCAAGC
AGGAGCCTGGCTTTGCCCGCCATGCATCAGCTAACTCACTACCTGCCGTGCTTACCTTGGGCTCCCCTGA
GTGGGAGGAAGAGGAGGAGGAGATGGATCTTCGGGCTCTCAGGGAGTTGAGGCCCTTCTCCAACCCGGAA
CTGGGGCTGACAGATGCCCTCCAGTGCCTCAACAGCAATGACTGGCAAATGAAGGAGAAGGGCCTGGTGA
ACATCCAGCGCCTGGCAGCTTGTCACTCGGAGGTCCTCGGTACACGGCTGCACGATGTGTCCTTGGCAGT
GACTGCGGAGGTCACCAACCTCCGTTCCAAGGTATCCCGCCTGGCCATCAGCACCCTGGGAGACCTCTTC
CGAGTTTTGAAGAAGAACATGGACCAGGAGGCTGAGGAGATTGTCCGCTGCCTTCTGCAGAAGATGGGGA
ACACCAGCGAGTTCATTCAGCGGGCAGCCAACCGGGCTCTGGGTGCCATGGTGGAAAACGTGACCCCTGC
CCGTGCACTGGTGGCCCTCACATCTGCGGGTGTCTACCACCGGAACCCCCTAGTCCGGAAATGTACAGCC
AAGCATCTCTCGGCCGTCCTGGAGCAGATCGGGGCAGAGAAGCTTCTCTCCGGCTCCAGAGACAACACAG
ACATGCTGGTGCACAACTTGGTGAGGTTGGCCCAGGACTCTAACCAAGACACCAGGTTTTATGGCCGGAA
GATGGTGAATATCTTGATGGCCAATGCAAAGTTTGATGCATTCCTGAAGCAATCTCTCCCATCTCATGAC
CTACGGAAAGTCATGGCAGCCATCAAACAACGGGGAATCCAAGACAATCACGAACTCCAATCTGCCAAAG
GTCGAAAGGTGTCAAAGAGTCTGGTGGTGTGTGAGAACGGGCTGCCTAGTCATGAGGGTGTGGAGACGTC
AGAGCAGCTGCGGGAGCTGACCAGGCTGTTGGAGGCCAAGGAGTTCCAGGCTCGGATGGAAGGCGTTGGG
AAGCTCCTTGAGTACTGCAAGGCCAAGCCAGAGCTCGTGGCTGCCAACCTAGTCCAGGTCTTTGATGTTT
TCACCCCAAGGCTTCACGATTCCAACAAGAAAGTGAACCAGTGGGCGCTGGAGTCCCTCGCACAGATGCT
TCCCATCCTGAAAGAGAGCATCCACCCCATGCTGCTGTCCCTCATCATCGCTGCTGCAGACAACCTTAAC
TCTAAGAACTCTGGGATTTCCACCGCTGCCTCCACCGTACTGGATGCCATGATGGGCAGCCTGGACCACC
TTTGCCTCCTGCAAGCGTTTGCTGGGCGCGTGCGTTTCCTGACAGGTCCTGCAGTGCTGGATATCACAGA
TCGCCTCTCAGTGCTGGTTGCCTCAGTGTATCCCCGGAAGCCTCAGGCTGTGGAACGGCATATCCTTCCA
GTCCTCTGGTACTTCCTGAACAAAATGAGCGGCAATGGCGTGCTGCCCGGGCGTGGCGGGAACGTCCGCA
CAGCGGTGTGCAGGCTGGCCAGGAGCCTGCAGGAGCAAATGGGGTCCCGCCTGCAGGACTTCGCTGCCAG
TCAGCCCCAGCAAGTCCTCAAGGCGCTGCAGGGACTTTTAGCCTCTGAATCTCTGGGGGCCAACGACAAG
GTCATAGGTGGAAGAATGGCCCCTGACATCCAGATGACTGGAACCACCTGTCCCCAGCAGCTGGATTAA

Translation (1002 aa):
MDTRDDVTLAKVPAPVAVYCGSVPRTSVGLRAPPPGGIDSSLLAHDEASLQPVSSVLPSSEKPSQLSREH
EDQSSLMLNAPLKGWQARNGYPRGLGVLPLGHHLGAAIPSLESEASSVARDTIQIKDKLKKRRLSEGMAA
SSQASLDPVGGPRGVPLRSTIPRTTSQRLLRVPRPMPPIQSIPTTPEANSAKEKDLDPPGGRQDLQDPGA
SAQEVQISRQYLHCADEKMHKSLGGLVIPPIPKARMPTGTSSCRPGSLPSPLCPSQDVLMGPKAPHTRLT
CENGPLEKTPKSPASKPLVPVVKAKSAEAPETSLASSQSTFTLTAFSSHAKETRSLENEEDQKESSTKVQ
VTISKSAQEKMRLKQMKEMELLRRAKEPEWERELVSQGLGTRRTSAKEGLLPLRGSGALSEPAGMSSPRR
NNMGALQRKRANRASLPSIPVSKQEPGFARHASANSLPAVLTLGSPEWEEEEEEMDLRALRELRPFSNPE
LGLTDALQCLNSNDWQMKEKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVTNLRSKVSRLAISTLGDLF
RVLKKNMDQEAEEIVRCLLQKMGNTSEFIQRAANRALGAMVENVTPARALVALTSAGVYHRNPLVRKCTA
KHLSAVLEQIGAEKLLSGSRDNTDMLVHNLVRLAQDSNQDTRFYGRKMVNILMANAKFDAFLKQSLPSHD
LRKVMAAIKQRGIQDNHELQSAKGRKVSKSLVVCENGLPSHEGVETSEQLRELTRLLEAKEFQARMEGVG
KLLEYCKAKPELVAANLVQVFDVFTPRLHDSNKKVNQWALESLAQMLPILKESIHPMLLSLIIAAADNLN
SKNSGISTAASTVLDAMMGSLDHLCLLQAFAGRVRFLTGPAVLDITDRLSVLVASVYPRKPQAVERHILP
VLWYFLNKMSGNGVLPGRGGNVRTAVCRLARSLQEQMGSRLQDFAASQPQQVLKALQGLLASESLGANDK
VIGGRMAPDIQMTGTTCPQQLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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