NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28924.1 Public Mus musculus 17 Crb3 23 108 98 CCDS HistoryNCBI Gene:224912Re-query CCDS DB by CCDS ID:28924.1Re-query CCDS DB by GeneID:224912See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071826.9 ENSMUSP00000071729.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071826.9Link to Ensembl Protein Viewer:ENSMUSP00000071729.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071826Re-query CCDS DB by Protein ID:ENSMUSP00000071729
Original member Current member EBI ENSMUST00000097299.9 ENSMUSP00000094902.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097299.9Link to Ensembl Protein Viewer:ENSMUSP00000094902.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097299Re-query CCDS DB by Protein ID:ENSMUSP00000094902
Original member Current member EBI ENSMUST00000163763.1 ENSMUSP00000132502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163763.1Link to Ensembl Protein Viewer:ENSMUSP00000132502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163763Re-query CCDS DB by Protein ID:ENSMUSP00000132502
Original member NCBI NM_001359813.1 NP_001346742.1 Updated not alive Link to Nucleotide Sequence:NM_001359813.1Link to Protein Sequence:NP_001346742.1Re-query CCDS DB by Nucleotide ID:NM_001359813Re-query CCDS DB by Protein ID:NP_001346742
Current member NCBI NM_001359813.2 NP_001346742.1 Accepted alive Link to Nucleotide Sequence:NM_001359813.2Link to Protein Sequence:NP_001346742.1Re-query CCDS DB by Nucleotide ID:NM_001359813Re-query CCDS DB by Protein ID:NP_001346742Link to BLAST:NP_001346742.1
Original member NCBI NM_177638.5 NP_808306.1 Updated not alive Link to Nucleotide Sequence:NM_177638.5Link to Protein Sequence:NP_808306.1Re-query CCDS DB by Nucleotide ID:NM_177638Re-query CCDS DB by Protein ID:NP_808306
Current member NCBI NM_177638.6 NP_808306.1 Accepted alive Link to Nucleotide Sequence:NM_177638.6Link to Protein Sequence:NP_808306.1Re-query CCDS DB by Nucleotide ID:NM_177638Re-query CCDS DB by Protein ID:NP_808306Link to BLAST:NP_808306.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346742.1 113 Q8QZT4-1 113 100% 0 0
NP_808306.1 113 Q8QZT4-1 113 100% 0 0

Chromosomal Locations for CCDS 28924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57062694 57062766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57063637 57063698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57065090 57065296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGGCGACCCCAGGCCTGGGGGTGCTCTTGGCGTTTGGTTTGCCGATGCTGCCCTCCGGCTGGAGCCTAA
CAGCACCGGACCCTTTCACAAATAGCACAACTCAACCCCCAGGTGATGAGTCCAACGGGGGCCTGTCTTC
AGGGGCTATTGTAGCCATCACTGTGGTCTTTTCCATTCTGGGAGTCCTCCTTATAGCAGTGGGACTGTTT
CTGCTCATGCGAAAACTTCGGGAAAAGCGGCAGACAGAGGGCACCTACCGGCCCAGCAGTGAGGAGCAGG
TGGGTGCCCGTGCTCCACCACCCCCCAACCTCAAGCTGCCCCCGGAGGAGCGGCTCATCTGA

Translation (113 aa):
MATPGLGVLLAFGLPMLPSGWSLTAPDPFTNSTTQPPGDESNGGLSSGAIVAITVVFSILGVLLIAVGLF
LLMRKLREKRQTEGTYRPSSEEQVGARAPPPPNLKLPPEERLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH