CCDS Report for Consensus CDS

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Report for CCDS28910.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
28910.1	Public	Mus musculus	17	Lonp1	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28910.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000047226.9	ENSMUSP00000041814.8	Accepted	alive
		NCBI	NM_028782.2	NP_083058.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_083058.2	949	Q8CGK3	949	100%	0	0

Chromosomal Locations for CCDS 28910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)

Genome Browser links:

Chromosome	Start	Stop
17	56614384	56614563
17	56614636	56614800
17	56614874	56615091
17	56615250	56615415
17	56615504	56615644
17	56615926	56616042
17	56616130	56616252
17	56616359	56616446
17	56617754	56617932
17	56618318	56618456
17	56619172	56619392
17	56619986	56620069
17	56620223	56620352
17	56620514	56620575
17	56621924	56622158
17	56622434	56622553
17	56623137	56623225
17	56626481	56626873

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGGCGGCGAGCACAGGCTACGTGCGGCTCTGGGCCGCTGCGCGGTGCTGGGTTCTGCGGCGGCCGCTGC TGGCTGTCACCGGAGGCCGGGTCCCGAGCGCGTCCGGGTCGTGGCTGCGCCGAGGATGTCGGGCCTGCGA CATGTCAGCTCCCTGGGGCGGCCGCGTTCTTCCCGGCGGGGTCCAGTGGCGGGGGCTGTGGGACTCGGGC AACCGCGGTGGCAGCGACGAGACCTCCGAGGGCGGTGCGGAGGACGGGGCCACGGCGAGCACCGGGGAAG GCCCGGTCGTCACAGCGCTCGCGCCCATGACCGTCCCGGATGTGTTTCCTCACCTGCCGCTCATCGCCAT CACCCGCAACCCTGTGTTCCCGCGCTTTATCAAGATCGTGGAGGTTAAAAATAAGAAGTTGGTTGAGCTC CTGAGAAGGAAAGTCCGACTTGCACAGCCCTATGTTGGCGTCTTCCTAAAGAGAGATGACAACAATGAGT CGGACGTGGTGGAGAGCCTGGATGAAATCTACCATACGGGAACATTCGCTCAGATTCATGAGATGCAGGA CCTCGGAGACAAGTTGCGAATGATTGTCACTGGCCACAGAAGGATTCACATCAGCCGGCAGCTGGAGGTG GAACCAGAGGGGCTTGAGCCAGAGGCAGAGAAACAAAAGTCCAGGAGGAAGCTGAAGCGAGGCAAGAAAG AGGTGGAGGATGAGCTGGGCCCCAAGCCCCAGCTGGAGATGGTGACCGAGGCTGCCACTGACACATCCAA GGAGGTGCTCATGGTGGAGGTTGAGAATGTAGCCCATGAAGACTTCCAGGTCACAGAGGAAGTGAAGGCC CTGACTGCAGAGATTGTGAAGACCATTCGGGATATCATCGCCTTGAACCCTCTGTACAGAGAGTCCGTGC TGCAGATGATGCAGGCAGGCCAGCGTGTGGTGGACAACCCCATCTACTTGAGCGACATGGGTGCGGCACT CACTGGGGCGGAGTCCCATGAGCTGCAAGATGTTCTGGAAGAGACCAACATCCTTAAGCGGCTCTATAAG GCCCTGTCTCTCTTGAAGAAGGAGTTTGAGTTGAGCAAGCTTCAGCAACGCCTAGGCCGTGAGGTAGAGG AGAAGATCAAGCAGACACACAGGAAGTACCTGCTGCAGGAGCAGTTGAAGATCATCAAGAAGGAATTGGG GCTGGAGAAAGATGATAAAGATGCCATTGAGGAGAAGTTCCGGGAACGCCTCAGGGAGCTTGTGGTTCCC AAGCATGTGATGGACGTGGTGGATGAGGAGCTGAGCAAGCTTGCTCTACTGGACAACCACTCCTCTGAGT TCAATGTCACTCGAAACTACCTGGACTGGCTGACATCCATCCCATGGGGCCGGCAGAGTGATGAGAACTT GGACTTGGCTCGGGCCCAGGCTGTGCTGGAGGAGGACCACTACGGCATGGAGGATGTGAAGAAGCGTGTC CTGGAGTTCATTGCAGTCAGCCAGCTCAGAGGCTCCACACAAGGCAAGATCCTCTGCTTCCACGGCCCAC CGGGGGTGGGCAAGACCAGCATTGCACGCTCCATTGCCCGTGCCCTTGGCCGAGAATACTTCCGTTTCAG TGTTGGTGGCATGACAGATGTGGCAGAAATCAAGGGGCACAGGCGTACCTACGTGGGGGCCATGCCTGGG AAGATCATCCAGTGTCTGAAGAAGACCAAGACAGAGAACCCGCTAGTGCTCATTGATGAGGTGGACAAGA TTGGCCGAGGCTACCAAGGGGACCCGTCATCAGCACTGCTGGAGTTGCTGGACCCTGAGCAGAATGCCAA CTTCCTGGACCACTACCTGGATGTGCCAGTGGATCTGTCCAAGGTGCTATTCATCTGCACGGCCAATGTC ATTGACACCATCCCAGAACCACTGAGGGACCGCATGGAGATGATCAATGTGTCTGGCTATGTAGCACAGG AGAAGCTGGCCATCGCAGAGCGGTACCTGGTGCCACAGGCCCGCACCCTGTGTGGCCTAGATGAGAGCAA GGCCCAGCTGTCAGCAGCAGTGCTCACACTGCTCATCAAGCAATACTGCAGGGAGAGTGGTGTGCGCAAC CTACAGAAGCAGGTGGAGAAGGTGCTGCGCAAGGCTGCATACAAGATCGTAAGTGGGGAGGCCCAGACAG TACAGGTGACACCTGAGAACCTACAAGACTTTGTTGGGAAGCCTGTGTTCACAGTGGAGCGCATGTACGA AGTCACACCTCCTGGCGTGGTCATGGGTTTGGCCTGGACTGCCATGGGGGGCTCTACATTGTTTGTGGAG ACATCTTTGAGGCGGCCCCAGCCTAGTGGCAGCAAGGAGGACAAGGATGGCAGCCTAGAGGTGACAGGTC AGCTGGGAGATGTGATGAAAGAGAGTGCCCGCATAGCCTACACCTATGCTCGTGCCTTCCTGATGGAGCA GGACCCTGAAAATGACTTCCTAGTCACCTCACACATCCACCTGCATGTGCCTGAGGGTGCTACCCCCAAG GATGGTCCCAGCGCAGGCTGTACTATTGTCACTGCACTGCTGTCCCTGGCTCTGGGCCAGCCAGTGTTGC AGAACCTGGCTATGACTGGGGAGGTCTCCCTCACTGGCAAGGTGTTGCCTGTGGGTGGCATCAAGGAGAA GACCATTGCGGCTAAGCGTGCAGGTGTGACCTGCATCATTCTGCCTGCTGAGAACAGAAAGGACTACTCG GATTTAGCTCCTTTTATCACAGAGGGCCTTGAAGTTCACTTCGTGGAACACTATCGGGACATATTCCCCA TTGCCTTCCCCCGGCGAGAGCACAGGGAGGCACTGGCCGTGGAGAGATGA
Translation (949 aa):
MAASTGYVRLWAAARCWVLRRPLLAVTGGRVPSASGSWLRRGCRACDMSAPWGGRVLPGGVQWRGLWDSG NRGGSDETSEGGAEDGATASTGEGPVVTALAPMTVPDVFPHLPLIAITRNPVFPRFIKIVEVKNKKLVEL LRRKVRLAQPYVGVFLKRDDNNESDVVESLDEIYHTGTFAQIHEMQDLGDKLRMIVTGHRRIHISRQLEV EPEGLEPEAEKQKSRRKLKRGKKEVEDELGPKPQLEMVTEAATDTSKEVLMVEVENVAHEDFQVTEEVKA LTAEIVKTIRDIIALNPLYRESVLQMMQAGQRVVDNPIYLSDMGAALTGAESHELQDVLEETNILKRLYK ALSLLKKEFELSKLQQRLGREVEEKIKQTHRKYLLQEQLKIIKKELGLEKDDKDAIEEKFRERLRELVVP KHVMDVVDEELSKLALLDNHSSEFNVTRNYLDWLTSIPWGRQSDENLDLARAQAVLEEDHYGMEDVKKRV LEFIAVSQLRGSTQGKILCFHGPPGVGKTSIARSIARALGREYFRFSVGGMTDVAEIKGHRRTYVGAMPG KIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV IDTIPEPLRDRMEMINVSGYVAQEKLAIAERYLVPQARTLCGLDESKAQLSAAVLTLLIKQYCRESGVRN LQKQVEKVLRKAAYKIVSGEAQTVQVTPENLQDFVGKPVFTVERMYEVTPPGVVMGLAWTAMGGSTLFVE TSLRRPQPSGSKEDKDGSLEVTGQLGDVMKESARIAYTYARAFLMEQDPENDFLVTSHIHLHVPEGATPK DGPSAGCTIVTALLSLALGQPVLQNLAMTGEVSLTGKVLPVGGIKEKTIAAKRAGVTCIILPAENRKDYS DLAPFITEGLEVHFVEHYRDIFPIAFPRREHREALAVER

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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