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Report for CCDS28895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28895.1 Public Mus musculus 17 Lrg1 23 108 98 CCDS HistoryNCBI Gene:76905Re-query CCDS DB by CCDS ID:28895.1Re-query CCDS DB by GeneID:76905See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041357.8 ENSMUSP00000038048.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041357.8Link to Ensembl Protein Viewer:ENSMUSP00000038048.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041357Re-query CCDS DB by Protein ID:ENSMUSP00000038048
Original member Current member NCBI NM_029796.2 NP_084072.1 Accepted alive Link to Nucleotide Sequence:NM_029796.2Link to Protein Sequence:NP_084072.1Re-query CCDS DB by Nucleotide ID:NM_029796Re-query CCDS DB by Protein ID:NP_084072Link to BLAST:NP_084072.1

Chromosomal Locations for CCDS 28895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56119942 56120944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56121861 56121886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGTCTCTTGGCAGCATCAAGGAAGCCTCCAGGATCTCAAGACCTGCCTTGCCAGAACCCTGTTTCTCC
TG
GCCCTCTTGGGCAGGGTGTCCAGCCTCAAGGAATGCCTGATACTGCAGTCGGCTGAGGGTAGCACCGT
C
TCCTGCCATGGTCCCACCGAGTTTCCGAGCTCCCTCCCTGCCGACACTGTCCATCTGTCGGTGGAATTC
TCC
AACCTGACGCAGCTGCCCGCCGCCGCCCTGCAAGGGTGTCCGGGTCTGCGGGAGCTGCACCTCTCGA
GC
AATCGCCTGCAGGCGCTGTCTCCCGAGTTGCTGGCGCCCGTGCCCCGGCTGCGCGCCCTGGATCTGAC
C
CGCAATGCTCTCCGCAGCCTGCCCCCCGGGTTGTTCAGCACCTCGGCCAACCTGAGCACCCTGGTCCTG
AGG
GAGAACCAGCTGCGGGAGGTGAGCGCGCAATGGCTTCAGGGCCTGGACGCCCTGGGCCACTTGGACC
TG
GCGGAGAACCAGCTGAGTTCGCTGCCCTCCGGGCTCCTCGCCAGCCTCGGCGCCCTGCACACCCTCGA
C
CTTGGGTACAACCTGCTGGAGTCGCTGCCCGAGGGACTCCTGCGGGGCCCAAGGCGGCTGCAGCGCCTG
CAC
CTGGAAGGGAACCGACTGCAGAGGCTGGAGGATAGCCTGCTTGCGCCCCAACCGTTCCTGCGCGTCC
TG
TTCCTGAATGACAACCAGTTGGTCGGGGTGGCGACCGGCTCCTTCCAGGGCCTACAGCACCTGGATAT
G
TTGGATCTGTCCAATAACTCTCTGTCCAGCACGCCCCCGGGCCTGTGGGCGTTCCTGGGGAGGCCGACC
CGC
GACATGCAGGACGGCTTCGACATCTCCCACAACCCCTGGATCTGTGACAAGAACCTGGCGGACCTTT
GC
CGCTGGCTGGTCGCCAACCGAAACAAGATGTTCTCACAGAACGACACGCGCTGTGCGGGGCCCGAGGC
C
ATGAAGGGTCAGCGGCTGCTGGACGTGGCAGAGCTGGGGTCCCTGTGA


Translation (342 aa):
MVSWQHQGSLQDLKTCLARTLFLLALLGRVSSLKECLILQSAEGSTVSCHGPTEFPSSLPADTVHLSVEF
S
NLTQLPAAALQGCPGLRELHLSSNRLQALSPELLAPVPRLRALDLTRNALRSLPPGLFSTSANLSTLVL
R
ENQLREVSAQWLQGLDALGHLDLAENQLSSLPSGLLASLGALHTLDLGYNLLESLPEGLLRGPRRLQRL
H
LEGNRLQRLEDSLLAPQPFLRVLFLNDNQLVGVATGSFQGLQHLDMLDLSNNSLSSTPPGLWAFLGRPT
R
DMQDGFDISHNPWICDKNLADLCRWLVANRNKMFSQNDTRCAGPEAMKGQRLLDVAELGSL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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