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Report for CCDS28871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28871.1 Public Mus musculus 17 Lrfn2 23 108 98 CCDS HistoryNCBI Gene:70530Re-query CCDS DB by CCDS ID:28871.1Re-query CCDS DB by GeneID:70530See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046254.2 ENSMUSP00000047573.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046254.2Link to Ensembl Protein Viewer:ENSMUSP00000047573.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000046254Re-query CCDS DB by Protein ID:ENSMUSP00000047573
Original member Current member NCBI NM_027452.3 NP_081728.2 Accepted alive Link to Nucleotide Sequence:NM_027452.3Link to Protein Sequence:NP_081728.2Re-query CCDS DB by Nucleotide ID:NM_027452Re-query CCDS DB by Protein ID:NP_081728Link to BLAST:NP_081728.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081728.2 788 Q80TG9 788 100% 0 0

Chromosomal Locations for CCDS 28871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49069893 49071292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49096251 49097217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGGAGACTCTGCTTGGTGGGCTGCTGGCTTTTGGCATGGCGTTTGCTGTGGTCGATGCCTGCCCCAAGT
ACTGCGTCTGCCAGAATCTGTCTGAGTCACTGGGGACCCTGTGTCCCTCCAAGGGGCTCCTCTTTGTGCC
CCCTGACATTGACCGGAGGACGGTGGAGCTGCGTCTGGGTGGCAACTTCATCATCCACATTGGCCGCCAA
GACTTTGCCAACATGACAGGGCTGGTGGATCTGACCTTGTCCAGGAACACCATCAGCCATATCCAGCCCT
TCTCCTTCCTGGACCTTGAGAGCCTCCGCTCCCTGCACCTTGACAGCAACCGGCTACCTAGCCTTGGGGA
GGACACACTCCGGGGTCTGGTCAACCTGCAACACCTTATTGTGAACAATAACCAGCTGGGTGGCATCGCT
GATGATGCCTTTGAAGACTTCTTGCTGACTTTAGAAGACCTGGACCTATCTTACAACAACCTCCACGGAC
TTCCCTGGGATTCCGTACGGCGCATGGTCAACCTCCATCAGCTGAGTCTGGACCACAATCTGCTGGACCA
CATTGCTGAGGGCACTTTTGCAGACCTGCAGAAACTGGCCCGCCTGGACCTCACATCCAATCGGCTGCAG
AAACTTCCCCCGGACCCCATCTTTGCCCGCTCCCAGGCTTCCTTGCTAACTGCCACGCCCTTTGCCCCAC
CCCTGTCTTTTAGTTTTGGAGGGAACCCGCTGCACTGCAATTGTGAGCTTCTCTGGCTGCGGAGGCTGGA
GAGGGATGATGACCTGGAGACCTGTGGATCCCCCGGAAGTCTCAAGGGTCGCTACTTTTGGCATATTCGT
GAGGAGGAGTTTGTGTGTGAGCCGCCTCTCATCACCCAGCACACACACAAGCTGCTGGTTCTGGAGGGCC
AGGCAGCCACTCTTAAGTGCAAGGCCATTGGGGACCCCAGCCCTTTGATCCACTGGGTTGCCCCCGATGA
CCGCTTGGTGGGAAACTCTTCCAGGACTGCTGTATATGACAATGGCACCCTGGACATTCTAATTACCACC
TCTCAGGACAGTGGACCCTTTACCTGCATCGCAGCCAATGCAGCAGGAGAGGCTACGGCCACTGTAGAGG
TCTCCATTGTGCAGCTCCCACACCTTAGTAACAGCACTAGCCGGATGGCACCCCCCAAGTCTCGCCTTTC
GGACATCACAGGTTCCAGCAAGACCAGCCGGGGAGGGGGAGGTAGTGGGGCTGGGGAGCCTCCCAAAAGC
ACCCCAGAGAGGGCTGTGCTTGTGTCCGATGTTACCACCACATCTGCCCTGGTCAAGTGGTCTGTCAGCA
AGTCAGCACCCAGGGTGAAGATGTATCAGCTGCAGTACAACTGTTCTGATGATGAGGTGCTGATCTACAG
GATGATCCCAGCCTCTAACAAGGCCTTCGTGGTCAACAACCTGGTGTCCGGAACGGGCTACGACTTGTGC
GTACTGGCTATGTGGGACGACACAGCCACGACGCTCACAGCCACCAACATTGTGGGCTGTGCCCAGTTCT
TCACCAAGGCCGACTACCCACAATGCCAGTCTATGCACAGTCAGATCCTGGGGGGCACCATGATTCTGGT
CATCGGAGGTATCATTGTGGCCACACTGCTGGTCTTCATTGTAATCCTCATGGTGCGGTACAAGGTCTGC
AACCACGACACCCCAGGAAAAATGGCAGCCGCCACTGTCAGCAATGTGTACTCGCAGACCAATGGGTCTC
AGCCTCCACCTCTGGGTGGGATACCCGTTGGCCAGCTTCCTCAGGCACCACCCAAAGTTGTGGTGCGAAA
TGAGTTGATGGACTTCAGTACCAGCCTGGCCAGGGCCTGTGACTCCTCTTCTTCCAGCTCACTGGGCAGC
GGGGAAGCCGCGGGGCTGGGCCGGGGTCCCTGGAGGCTCCCACCCCCAGCTCCTCGTCCCAAGCCCAGCC
TTGACCGCTTGATGGGAGCCTTTGCCTCCCTGGACCTCAAGAGTCAAAGGAAAGAAGAACTTCTAGACTC
CAGGACTCCAGCAGGCAGAGGGGCAGGGACATCATCCAGAGGCCACCACTCAGACCGAGAGCCACTGCTG
GGGCCCCCGGCCACCCGTGCCAGGAGTCTTCTCCCTTTGCCCCTGGAGGGCAAGGCCAAACGAAGCCACT
CTTTTGACATGGGGGACTTTGCAGCTGCAGCTGCAGCTGTTCCTGGTGGCTACAGTCCCCCTAGGCGGGT
CTCAAACATCTGGACGAAGCGCAGCCTGTCTGTCAATGGCATGCTCTTGCCCTTTGAGGAGAGTGACCTG
GTGGGAGCCCGGGGGACATTTGGCAGCTCAGAGTGGGTAATGGAAAGTACTGTGTAG

Translation (788 aa):
METLLGGLLAFGMAFAVVDACPKYCVCQNLSESLGTLCPSKGLLFVPPDIDRRTVELRLGGNFIIHIGRQ
DFANMTGLVDLTLSRNTISHIQPFSFLDLESLRSLHLDSNRLPSLGEDTLRGLVNLQHLIVNNNQLGGIA
DDAFEDFLLTLEDLDLSYNNLHGLPWDSVRRMVNLHQLSLDHNLLDHIAEGTFADLQKLARLDLTSNRLQ
KLPPDPIFARSQASLLTATPFAPPLSFSFGGNPLHCNCELLWLRRLERDDDLETCGSPGSLKGRYFWHIR
EEEFVCEPPLITQHTHKLLVLEGQAATLKCKAIGDPSPLIHWVAPDDRLVGNSSRTAVYDNGTLDILITT
SQDSGPFTCIAANAAGEATATVEVSIVQLPHLSNSTSRMAPPKSRLSDITGSSKTSRGGGGSGAGEPPKS
TPERAVLVSDVTTTSALVKWSVSKSAPRVKMYQLQYNCSDDEVLIYRMIPASNKAFVVNNLVSGTGYDLC
VLAMWDDTATTLTATNIVGCAQFFTKADYPQCQSMHSQILGGTMILVIGGIIVATLLVFIVILMVRYKVC
NHDTPGKMAAATVSNVYSQTNGSQPPPLGGIPVGQLPQAPPKVVVRNELMDFSTSLARACDSSSSSSLGS
GEAAGLGRGPWRLPPPAPRPKPSLDRLMGAFASLDLKSQRKEELLDSRTPAGRGAGTSSRGHHSDREPLL
GPPATRARSLLPLPLEGKAKRSHSFDMGDFAAAAAAVPGGYSPPRRVSNIWTKRSLSVNGMLLPFEESDL
VGARGTFGSSEWVMESTV


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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