NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28832.1 Public Mus musculus 17 Klc4 23 108 98 CCDS HistoryNCBI Gene:74764Re-query CCDS DB by CCDS ID:28832.1Re-query CCDS DB by GeneID:74764See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28832.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003642.6 ENSMUSP00000003642.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003642.6Link to Ensembl Protein Viewer:ENSMUSP00000003642.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003642Re-query CCDS DB by Protein ID:ENSMUSP00000003642
Original member Current member EBI ENSMUST00000233974.1 ENSMUSP00000156564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233974.1Link to Ensembl Protein Viewer:ENSMUSP00000156564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233974Re-query CCDS DB by Protein ID:ENSMUSP00000156564
Original member NCBI NM_001357130.1 NP_001344059.1 Updated not alive Link to Nucleotide Sequence:NM_001357130.1Link to Protein Sequence:NP_001344059.1Re-query CCDS DB by Nucleotide ID:NM_001357130Re-query CCDS DB by Protein ID:NP_001344059
Current member NCBI NM_001357130.2 NP_001344059.1 Accepted alive Link to Nucleotide Sequence:NM_001357130.2Link to Protein Sequence:NP_001344059.1Re-query CCDS DB by Nucleotide ID:NM_001357130Re-query CCDS DB by Protein ID:NP_001344059Link to BLAST:NP_001344059.1
Original member NCBI NM_029091.3 NP_083367.1 Updated not alive Link to Nucleotide Sequence:NM_029091.3Link to Protein Sequence:NP_083367.1Re-query CCDS DB by Nucleotide ID:NM_029091Re-query CCDS DB by Protein ID:NP_083367
Current member NCBI NM_029091.4 NP_083367.1 Accepted alive Link to Nucleotide Sequence:NM_029091.4Link to Protein Sequence:NP_083367.1Re-query CCDS DB by Nucleotide ID:NM_029091Re-query CCDS DB by Protein ID:NP_083367Link to BLAST:NP_083367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344059.1 619 Q9DBS5 619 100% 0 0
NP_083367.1 619 Q9DBS5 619 100% 0 0

Chromosomal Locations for CCDS 28832.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46631023 46631073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46631828 46631891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46632033 46632148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46632750 46632890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46635410 46635518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46635732 46635802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46635976 46636028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46636193 46636292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46636620 46636793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46636913 46637014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46639395 46639482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46639891 46640110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46640623 46640704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46642114 46642344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46644249 46644506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGTCAGGCTTGGTGTTGGGGCAGCGGGATGAGCCTGCAGGGCACCGGCTCAGTCAAGAGGAGATCTTGG
GCAGCACCAAGGTGGTGAGCCAAGGGCTGGAGGCCCTACACAGTGAACATCAGGCAGTGCTGCAGAGCCT
GTCCCACACCATTGAGTGTCTGCAACAGGGAGGCCATGAGGAAGGACTGGTCCATGAGAAGGCCCGGCAG
CTGCGGCGGTCTATGGAGAACATCGAGCTGGGGCTGAGCGAGGCCCAGGTGATGCTGGCGCTGGCTAGCC
ACCTGAGCACAGTGGAGTCTGAGAAGCAGAAGCTGCGAGCCCAAGTGCGGCGGCTATGCCAGGAGAATCA
GTGGCTCCGGGATGAGCTGGCGGGCACTCAGCAGCGCCTGCAGCGCAGCGAGCAGGCTGTGGCTCAGCTA
GAGGAAGAGAAGAAGCACCTGGAGTTCCTGCGGCAGCTGCGGCAGTATGATGAGGACGGCCACGGCATGG
AGGAGAAGGAGGGAGAGGCCACCAAAGATTCTCTGGATGACCTGTTCCCCAATGAGGAGGAGGAGGACTC
CGGCAACGACTTGTCCCGTGGTCAGGGTGCTGCAGCGGCCCAGCAGGGTGGATATGAGATCCCAGCAAGG
TTGCGGACCCTGCACAACCTGGTCATCCAGTATGCAGCTCAGGGTCGCTATGAGGTGGCGGTGCCACTCT
GCAAGCAAGCGCTAGAGGACCTGGAGCGCACATCTGGCCGAGGTCACCCTGATGTGGCTACCATGCTCAA
CATCCTGGCTCTGGTGTACCGGGACCAGAATAAGTACAAGGAGGCTGCTCATCTGCTGAACGATGCTCTC
AGCATCCGGGAGAGCACCCTGGGCCGGGACCACCCAGCCGTGGCTGCCACACTCAACAATCTGGCTGTGC
TGTACGGCAAACGCGGTAAATACAAGGAGGCAGAGCCACTGTGCCAGCGGGCACTGGAGATCCGAGAGAA
GGTCTTGGGCACTGACCATCCAGATGTGGCAAAACAGCTGAACAACTTGGCCCTCCTATGTCAAAACCAG
GGCAAGTACGAGGCGGTGGAACGCTATTATCAGCGGGCACTAGCCATCTATGAGAGCCAGCTAGGGCCAG
ACAACCCTAATGTAGCTCGGACCAAGAATAACCTGGCTTCCTGCTACCTAAAGCAGGGCAAGTACTCTGA
GGCCGAGGCTCTGTACAAAGAGATCCTGACCTGTGCCCATGTGCAGGAGTTCGGGTCTGTGGATGATGAC
CACAAGCCGATCTGGATGCATGCTGAGGAACGGGAGGAGATGAGCAGGAGCCGGCCCCGTGACAGCAGTG
CGCCCTATGCAGAGTACGGAGGGTGGTACAAGGCCTGCAGAGTGAGCAGCCCCACAGTGAACACTACTCT
GAAAAACCTAGGGGCTCTGTACAGGCGCCAGGGGAAGCTGGAGGCAGCCGAGACCCTGGAGGAATGTGCT
CTGCGCTCCCGGAAACAGGGTACTGACCCCATCAGTCAGACCAAGGTGGCAGAGCTGCTCGGGGAAGGAG
ATGGTAGAAAGGCCATCCAGGAGGGTCCTGGAGACAGCGTGAAGTTCGAGGGAGGTGAAGACGCATCAGT
GGCTGTGGAGTGGTCAGGGGATGGCAGTGGCACCCTCCAGAGGAGCGGCTCTCTGGGCAAGATCCGGGAT
GTGCTTCGTAGGAGCAGTGAGCTACTGGTGAGGAAGCTCCAGGGGACGGAGCCGCGACCTTCCAGCAGCA
GCATGAAGCGGGCGGCCTCGCTGAACTACTTAAACCAACCCAATGCAGCCCCCCTCCAGGTCTCCCGGGG
CCTCAGCGCCAGCACTGTGGACCTTTCTTCAAGTAGCTGA

Translation (619 aa):
MSGLVLGQRDEPAGHRLSQEEILGSTKVVSQGLEALHSEHQAVLQSLSHTIECLQQGGHEEGLVHEKARQ
LRRSMENIELGLSEAQVMLALASHLSTVESEKQKLRAQVRRLCQENQWLRDELAGTQQRLQRSEQAVAQL
EEEKKHLEFLRQLRQYDEDGHGMEEKEGEATKDSLDDLFPNEEEEDSGNDLSRGQGAAAAQQGGYEIPAR
LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL
SIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQ
GKYEAVERYYQRALAIYESQLGPDNPNVARTKNNLASCYLKQGKYSEAEALYKEILTCAHVQEFGSVDDD
HKPIWMHAEEREEMSRSRPRDSSAPYAEYGGWYKACRVSSPTVNTTLKNLGALYRRQGKLEAAETLEECA
LRSRKQGTDPISQTKVAELLGEGDGRKAIQEGPGDSVKFEGGEDASVAVEWSGDGSGTLQRSGSLGKIRD
VLRRSSELLVRKLQGTEPRPSSSSMKRAASLNYLNQPNAAPLQVSRGLSASTVDLSSSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH