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Report for CCDS28763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28763.1 Public Mus musculus 17 Or10al5 23 108 98 CCDS HistoryNCBI Gene:258622Re-query CCDS DB by CCDS ID:28763.1Re-query CCDS DB by GeneID:258622See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28763.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074555.7 ENSMUSP00000084377.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074555.7Link to Ensembl Protein Viewer:ENSMUSP00000084377.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074555Re-query CCDS DB by Protein ID:ENSMUSP00000084377
Original member Current member EBI ENSMUST00000174675.3 ENSMUSP00000133865.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174675.3Link to Ensembl Protein Viewer:ENSMUSP00000133865.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000174675Re-query CCDS DB by Protein ID:ENSMUSP00000133865
Original member Current member NCBI NM_146629.2 NP_666840.2 Accepted alive Link to Nucleotide Sequence:NM_146629.2Link to Protein Sequence:NP_666840.2Re-query CCDS DB by Nucleotide ID:NM_146629Re-query CCDS DB by Protein ID:NP_666840Link to BLAST:NP_666840.2

Chromosomal Locations for CCDS 28763.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37751856 37752821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGAGTATCAACTGCTCTCTGTGGCAGGAGAACAGCTTGTCTGTCAAACGCTTTGCATTTTCCAAGTTCT
CTGAGGTCCCTGGAGAATGCTTCCTCCTGTTTACCCTCATCCTCCTCATGTTCTTAGTATCTCTGACAGG
AAATGAACTCATAGCCATTGCCATCTGCACCAGTCCAGCCCTACATACCCCCATGTACTTCTTTCTAGCC
AACTTGTCTCTTCTGGAGATTGGCTACACTTGCTCTGTCATACCCAAAATGCTACAGAGCCTTGTAAGTG
AGGCCCGAGAAATCTCTCGGGAGGGATGTGCCACACAGATGTTTTTCTTCACATTTTTTGGTATAACTGA
GTGCTGTCTACTGGCAGCCATGGCCTATGACCGCTGCATGGCCATATGCTCCCCACTCCACTATGCAACA
CGAATGAGTCATGGGGTATGTGCCCATTTGGCAATAGTTTCATGGGGAATGGGATGTATAGTAGGGTTGG
GACAAACCAATTTTATTTTCTCGTTGAACTTCTGTGGACCCTGTGAGATAGACCACTTCTTCTGTGACCT
TCCACCTGTCCTGGCACTTGCCTGTGGAGATACATCCCAAAATGAGGCTGCAATCTTCGTGGCAGCAATT
CTTTGCATATCTAGCCCATTTTTGTTGATCATTTATTCCTATGTCAGAATTCTGGTTGCAGTGCTGGTGA
TGCCTTCACCTGAGGGGCGCCATAAAGCTCTCTCCACCTGTTCCTCCCATCTACTTGTAGTCACACTGTT
TTTTGGCTCAGGATCTATTACCTACTTGAGGCCCAAGTCTAGCCACTTACCAGGAATGGACAAACTCTTG
GCCCTTTTCTACACCGCGGTGACATCCATGCTGAACCCCATCATCTATAGCTTAAGGAACAAGGAAGTGA
AGGCAGCACTGAGAAAAACACTGAGTCTGAAGACATCTCGGGCAATAAATAGGTAA

Translation (321 aa):
MSINCSLWQENSLSVKRFAFSKFSEVPGECFLLFTLILLMFLVSLTGNELIAIAICTSPALHTPMYFFLA
NLSLLEIGYTCSVIPKMLQSLVSEAREISREGCATQMFFFTFFGITECCLLAAMAYDRCMAICSPLHYAT
RMSHGVCAHLAIVSWGMGCIVGLGQTNFIFSLNFCGPCEIDHFFCDLPPVLALACGDTSQNEAAIFVAAI
LCISSPFLLIIYSYVRILVAVLVMPSPEGRHKALSTCSSHLLVVTLFFGSGSITYLRPKSSHLPGMDKLL
ALFYTAVTSMLNPIIYSLRNKEVKAALRKTLSLKTSRAINR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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