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Report for CCDS28761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28761.1 Public Mus musculus 17 Or10al3 23 108 98 CCDS HistoryNCBI Gene:258095Re-query CCDS DB by CCDS ID:28761.1Re-query CCDS DB by GeneID:258095See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080483.9 ENSMUSP00000092919.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080483.9Link to Ensembl Protein Viewer:ENSMUSP00000092919.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080483Re-query CCDS DB by Protein ID:ENSMUSP00000092919
Original member Current member EBI ENSMUST00000213732.1 ENSMUSP00000150099.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213732.1Link to Ensembl Protein Viewer:ENSMUSP00000150099.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213732Re-query CCDS DB by Protein ID:ENSMUSP00000150099
Original member Current member NCBI NM_001011830.3 NP_001011830.2 Accepted alive Link to Nucleotide Sequence:NM_001011830.3Link to Protein Sequence:NP_001011830.2Re-query CCDS DB by Nucleotide ID:NM_001011830Re-query CCDS DB by Protein ID:NP_001011830Link to BLAST:NP_001011830.2

Chromosomal Locations for CCDS 28761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37700672 37701637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGAGTATCAACTGCTCTCTGTGGCAGGAGAACAGCTTGTCTGTCAAACGCTTTGCATTTGCCAAGTTCT
CTGAGGTTCCTGGAGAATGCTTCCTCCTATTTACCCTCATCCTCCTCATGTTCTTAGTATCACTGACAGG
AAATGCACTCATAGCCCTTGTCATCTGCACCAATCCATCCCTACACAACCCCATGTATTTCTTTCTGGCC
AACTTGTCTCTCCTGGAGATTGGCTACACTTGCTCTGTCATACCCAAAATGCTACAAAGCCTTGTAAGTG
AGGCCCGAGAAATCTCTCGGGAGGGTTGTGCCACACAGATGTTTTTCTTCACATTTTTTGGTATAACTGA
GTGCTGTCTACTGGCAGCTATGGCTTATGACCGCTGCATGGCCATATGCTCCCCACTTCACTATCCAACA
CGAATGAGTAGTGGGGTATGTGCCCATTTGGCAATAGTTTCATGGGGAATGGGATGTATAGTAGGGTTGG
GACAAACCAATTTTATTTTCTCCTTGGAGTTTTGTGGACCCTGTGAGATAGATCACTTCTTCTGTGACCT
TCCACCTGTCCTGGCACTTGCCTGTGGAGATACATCCCAAAATGAGGCTGCAATTTTTGTGGCAGCAGTT
CTCTGCATATCTAGCCCATTTTTGTTGATCATTTATTCCTATGTCAGAATTTTGGTTGCAGTGCTGGTGA
TGCCTTCACCTGAGGGGCGCCATAAAGCTCTCTCCACCTGTTCCTCCCATCTACTTGTAGTCACAATGTT
CTATGGCTCAGCATCTATTACTTACTTGAGGCCCAAGTCTAGCCACTCACCAGGAATGGACAAACTCTTG
GCCCTTTTCTACACAGCGGTGACATCCATGCTGAACCCCATCATCTATAGCTTAAGGAACAAGGAAGTAA
AGGCAGCACTGAGAAAAACACTGAGTCTGAAGAAACCTCTGGCAATAAATAGGTAA

Translation (321 aa):
MSINCSLWQENSLSVKRFAFAKFSEVPGECFLLFTLILLMFLVSLTGNALIALVICTNPSLHNPMYFFLA
NLSLLEIGYTCSVIPKMLQSLVSEAREISREGCATQMFFFTFFGITECCLLAAMAYDRCMAICSPLHYPT
RMSSGVCAHLAIVSWGMGCIVGLGQTNFIFSLEFCGPCEIDHFFCDLPPVLALACGDTSQNEAAIFVAAV
LCISSPFLLIIYSYVRILVAVLVMPSPEGRHKALSTCSSHLLVVTMFYGSASITYLRPKSSHSPGMDKLL
ALFYTAVTSMLNPIIYSLRNKEVKAALRKTLSLKKPLAINR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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