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Report for CCDS28757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28757.1 Public Mus musculus 17 Or14j3 23 108 98 CCDS HistoryNCBI Gene:258284Re-query CCDS DB by CCDS ID:28757.1Re-query CCDS DB by GeneID:258284See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076914.3 ENSMUSP00000076181.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076914.3Link to Ensembl Protein Viewer:ENSMUSP00000076181.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000076914Re-query CCDS DB by Protein ID:ENSMUSP00000076181
Original member Current member EBI ENSMUST00000216249.1 ENSMUSP00000149735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216249.1Link to Ensembl Protein Viewer:ENSMUSP00000149735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216249Re-query CCDS DB by Protein ID:ENSMUSP00000149735
Original member Current member EBI ENSMUST00000214871.1 ENSMUSP00000151201.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214871.1Link to Ensembl Protein Viewer:ENSMUSP00000151201.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214871Re-query CCDS DB by Protein ID:ENSMUSP00000151201
Original member Current member NCBI NM_146287.1 NP_666399.1 Accepted alive Link to Nucleotide Sequence:NM_146287.1Link to Protein Sequence:NP_666399.1Re-query CCDS DB by Nucleotide ID:NM_146287Re-query CCDS DB by Protein ID:NP_666399Link to BLAST:NP_666399.1

Chromosomal Locations for CCDS 28757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37589413 37590351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATAATGGAAAATATAACCACAATGAGTGGATTCCTCCTCATGGGATTCTCTGACAACCATGAGCTGC
AGATCTTACAGGCTGTGCTCTTCTTGGTGACATACCTAGTCGGCTCAGCAGGGAATGTCATCATTATCAC
CATCACAACACTGGACCCACAGCTCCAGTCTCCAATGTATTACTTTCTGAAGCAACTTTCCATTCTGGAC
CTCTCATCCCTCTCTGTCACAGTCCCTCAGTATGTTGACAGTTCCCTGGCACGAAGTGGCTACATTTCAT
ATGGGCAGTGCATGCTGCAGATATTTTTCTTTACATGGTTTGCCTGGGGTGAGATGGCCATTCTCACAGT
GATGTCATATGATCGTTATATAGCTGTTTGCCTTCCTCTCCACTATGAGATCATCATGTGTCCCAGAAAG
TGTAGGTGGGCTGTGACAGCTGTATGGCTAAGCAGCAGTATTCCAGGAACCCTATATCTAGCAACCATAT
TTTCTATTAGAATCTGTAGGGCCAAAATAATTCACCAATTCTTCTGTGATGTCCCCCAGCTGCTCAAGCT
CTCCTGCTCTAATGATTACCTTGTAATAATGGGAGTGGCTGACTTCCTGTCAGTAATAGGTTTTGCCTGC
TTCGTTGGGATTGTCATCTCCTATGTCCACATATTCTCCACAGTTCTCAGGATGCCCTCTGCTGAAAGCA
GGTCTAAGGTCTTCTCTACTTGCTTGCCGCACCTGTTTGTTGTCTCATTGTTTCTTTCTACAGGCATCTT
TGCATATCTAAACCCAACCTCAGACTTTCCAACTGCTTTAGAGTTCTTATTTTCTGTCTTTTATACAGTA
CTACCTCCAACTCTCAACCCTGTTATTTACAGTTTGAGAAATGATGCCATAAAGAGTGTTGTAAGGAAGT
TACTGTTGAGTAGAAAATTCACTAGTTAG

Translation (312 aa):
MIMENITTMSGFLLMGFSDNHELQILQAVLFLVTYLVGSAGNVIIITITTLDPQLQSPMYYFLKQLSILD
LSSLSVTVPQYVDSSLARSGYISYGQCMLQIFFFTWFAWGEMAILTVMSYDRYIAVCLPLHYEIIMCPRK
CRWAVTAVWLSSSIPGTLYLATIFSIRICRAKIIHQFFCDVPQLLKLSCSNDYLVIMGVADFLSVIGFAC
FVGIVISYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVSLFLSTGIFAYLNPTSDFPTALEFLFSVFYTV
LPPTLNPVIYSLRNDAIKSVVRKLLLSRKFTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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