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Report for CCDS28665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28665.1 Public Mus musculus 17 Zbtb12 23 108 98 CCDS HistoryNCBI Gene:193736Re-query CCDS DB by CCDS ID:28665.1Re-query CCDS DB by GeneID:193736See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052778.9 ENSMUSP00000057515.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052778.9Link to Ensembl Protein Viewer:ENSMUSP00000057515.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000052778Re-query CCDS DB by Protein ID:ENSMUSP00000057515
Original member NCBI NM_198886.3 NP_942589.3 Updated not alive Link to Nucleotide Sequence:NM_198886.3Link to Protein Sequence:NP_942589.3Re-query CCDS DB by Nucleotide ID:NM_198886Re-query CCDS DB by Protein ID:NP_942589
Current member NCBI NM_198886.4 NP_942589.3 Accepted alive Link to Nucleotide Sequence:NM_198886.4Link to Protein Sequence:NP_942589.3Re-query CCDS DB by Nucleotide ID:NM_198886Re-query CCDS DB by Protein ID:NP_942589Link to BLAST:NP_942589.3

Chromosomal Locations for CCDS 28665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34895241 34896620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCCTCTGGGGTGGAAGTCCTGCGCTTCCAGCTGCCTGGCCACGAGGCCGCAACGTTGCGGAACATGA
ACCAGCTCCGTGCAGAGGAGCGGTTCTGTGATGTGACCATCGTGGCCGACAGCCTCAAATTCCGTGGCCA
CAAGGTCATCCTGGCCGCCTGCTCACCGTTCCTCCGGGACCAGTTCTTGCTGAACCCCAGTTCTGAGCTG
CAGGTCTCACTGATGCACAGCGCGCGTATTGTGGCGGACTTGCTCCTCTCTTGCTACACAGGCGCCCTGG
AGTTCGCAGTCAGGGACATCGTGAACTACCTGACAGCAGCCTCCTACCTGCAAATGGAGCATGTAGTGGA
GAAATGCCGGAACGCCCTTAGCCAGTTCATTGAGCCCAAAATAGGCCTTAAAGAAGATGGGGTCAGCGAG
GCTAGCCTCCTAAGCAGTGTCAGTGCCACCAAGTCCCTCCTCCCTCCAGCCAGGACCCCAAAGCCAGCTC
CAAAACCCCCACCACCACCTCCTCTACCCCCTCCGCTCCTGCGACCGGTGAAGCTGGAGTTTCCGCTGGA
TGAGGACCTAGAGCTGAAGGCGGAAGAGGAGGATGAGGATGAAGATGAAGATGTTTCTGACATCTGCATC
GTCAAAGTGGAGTCGGCTCTAGAAGTGGCACACCGGCTCAAACCCCCTGGAAGCCTAGCCGGGGGTCTGG
GTATCGGGGCCTCTGTGAGCAGCCACCTGGGAGAGCTGGCCCAGAGTAGTGTGGCCCCCAACACTGTTAC
CCCACCGCAAGGGGTGGTGAAGGCATGCTACAGCCTGTCAGAGGACGCGGAAGGGGAAGGCCTGTTGTTG
ATCCCAGGAGGCCGGGCCAGTGTGGGGGCCACCTCGGGCCTAGTGGAAGCAGCAGCGGTGGCCATGGCTG
CCCGGGGGGCGGGGGGCAGTCTGGGGGCAGGGGGTAGCCGGGGACCTCTGCCTGGGGGCTTCTCAAGTGG
AAACCCCTTAAAGAACATCAAATGCACCAAATGCCCTGAAGTGTTCCAGGGTGTGGAGAAGCTGGTCTTC
CACATGCGTGCGCAACACTTCATCTTCATGTGCCCACGCTGCGGCAAGCAGTTCAACCACAGCAGCAACC
TCAACCGCCACATGAACGTCCACCGTGGTGTCAAGTCCCATTCATGTGGCATCTGCGGCAAGTGCTTTAC
TCAGAAGTCCACACTGCACGATCACCTCAACCTGCACTCAGGAGCCCGGCCCTACCGGTGCTCCTACTGT
GACGTGCGCTTTGCCCACAAGCCCGCCATTAGGCGGCACCTCAAGGAGCAGCATGGCAAAACCACAGCTG
AGAACGTGCTGGAAGCTGGTGTGGCTGAGATCAATGTCCTCATCCGCTGA

Translation (459 aa):
MASGVEVLRFQLPGHEAATLRNMNQLRAEERFCDVTIVADSLKFRGHKVILAACSPFLRDQFLLNPSSEL
QVSLMHSARIVADLLLSCYTGALEFAVRDIVNYLTAASYLQMEHVVEKCRNALSQFIEPKIGLKEDGVSE
ASLLSSVSATKSLLPPARTPKPAPKPPPPPPLPPPLLRPVKLEFPLDEDLELKAEEEDEDEDEDVSDICI
VKVESALEVAHRLKPPGSLAGGLGIGASVSSHLGELAQSSVAPNTVTPPQGVVKACYSLSEDAEGEGLLL
IPGGRASVGATSGLVEAAAVAMAARGAGGSLGAGGSRGPLPGGFSSGNPLKNIKCTKCPEVFQGVEKLVF
HMRAQHFIFMCPRCGKQFNHSSNLNRHMNVHRGVKSHSCGICGKCFTQKSTLHDHLNLHSGARPYRCSYC
DVRFAHKPAIRRHLKEQHGKTTAENVLEAGVAEINVLIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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