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Report for CCDS28604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28604.1 Public Mus musculus 17 Rsph1 23 108 98 CCDS HistoryNCBI Gene:22092Re-query CCDS DB by CCDS ID:28604.1Re-query CCDS DB by GeneID:22092See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024832.8 ENSMUSP00000024832.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024832.8Link to Ensembl Protein Viewer:ENSMUSP00000024832.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024832Re-query CCDS DB by Protein ID:ENSMUSP00000024832
Original member Current member NCBI NM_025290.4 NP_079566.1 Accepted alive Link to Nucleotide Sequence:NM_025290.4Link to Protein Sequence:NP_079566.1Re-query CCDS DB by Nucleotide ID:NM_025290Re-query CCDS DB by Protein ID:NP_079566Link to BLAST:NP_079566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079566.1 301 Q8VIG3-1 301 100% 0 0

Chromosomal Locations for CCDS 28604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31255176 31255219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31258098 31258226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31258788 31258947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31261755 31261826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31265814 31265949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31266343 31266433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31273317 31273422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31273525 31273638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31277202 31277255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGTCGGACCTGGGCTCTGAGGAGTTAGAGGAGGAGGGAGAGAACGACCTTGGGGAGTACGAAGGGGAGC
GCAATGAGGTGGGAGAACGACACGGACATGGGAAAGCACGACTGCCCAACGGGGACACATATGAAGGAAG
CTATGAGTTTGGAAAAAGACATGGCCAGGGGACTTACAAATTTAAGAATGGGGCCCGGTACACCGGAGAC
TATGTCAAAAATAAAAAGCACGGCCAAGGCACCTTTATCTATCCAGATGGATCCAGATATGAAGGGGAGT
GGGCTGATGACCAGAGGCACGGCCAAGGCGTGTACTACTATGTCAACAATGACACCTACACAGGGGAGTG
GTTCAATCATCAAAGGCACGGGCAAGGCACCTACCTCTACGCAGAGACCGGCAGTAAGTATGTCGGTACC
TGGGTGCACGGACAGCAGGAGGGTGCTGCCGAGCTCATCCACCTAAACCACAGGTACCAGGGCAAGTTCA
TGAACAAAAATCCTGTGGGCCCTGGAAAGTACGTATTTGATATTGGATGCGAACAGCACGGTGAATATCG
CCTCACAGATACGGAAAGAGGAGAAGAGGAGGAGGAGGAAGAGACATTAGTGAACATCGTTCCAAAATGG
AAAGCTCTCAACATCACAGAATTGGCCCTGTGGACTCCAACCCTCTCCGAGGAGCAGCCTCCCCCTGAGG
GCCAAGGCCAGGAGGAACCGCAGGGACTTACTGGCGTGGGTGACCCCTCAGAAGACATCCAGGCAGAAGG
TTTTGAGGGCGAGCTGGAGCCGAGGGGGGCCGATGAAGACGTAGACACGTTCAGGCAGGAGAGCCAGGAG
AACAGCTACGACATAGACCAGGGAAACTTGAACTTTGATGAAGAACCGTCAGACCTCCAGGATTAA

Translation (301 aa):
MSDLGSEELEEEGENDLGEYEGERNEVGERHGHGKARLPNGDTYEGSYEFGKRHGQGTYKFKNGARYTGD
YVKNKKHGQGTFIYPDGSRYEGEWADDQRHGQGVYYYVNNDTYTGEWFNHQRHGQGTYLYAETGSKYVGT
WVHGQQEGAAELIHLNHRYQGKFMNKNPVGPGKYVFDIGCEQHGEYRLTDTERGEEEEEEETLVNIVPKW
KALNITELALWTPTLSEEQPPPEGQGQEEPQGLTGVGDPSEDIQAEGFEGELEPRGADEDVDTFRQESQE
NSYDIDQGNLNFDEEPSDLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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