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Report for CCDS28599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28599.1 Public Mus musculus 17 Btbd9 23 108 98 CCDS HistoryNCBI Gene:224671Re-query CCDS DB by CCDS ID:28599.1Re-query CCDS DB by GeneID:224671See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079924.7 ENSMUSP00000078845.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079924.7Link to Ensembl Protein Viewer:ENSMUSP00000078845.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079924Re-query CCDS DB by Protein ID:ENSMUSP00000078845
Original member Current member EBI ENSMUST00000168787.7 ENSMUSP00000127300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168787.7Link to Ensembl Protein Viewer:ENSMUSP00000127300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168787Re-query CCDS DB by Protein ID:ENSMUSP00000127300
Original member Current member EBI ENSMUST00000237048.1 ENSMUSP00000157449.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237048.1Link to Ensembl Protein Viewer:ENSMUSP00000157449.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237048Re-query CCDS DB by Protein ID:ENSMUSP00000157449
Original member Current member NCBI NM_027060.1 NP_081336.1 Accepted alive Link to Nucleotide Sequence:NM_027060.1Link to Protein Sequence:NP_081336.1Re-query CCDS DB by Nucleotide ID:NM_027060Re-query CCDS DB by Protein ID:NP_081336Link to BLAST:NP_081336.1
Original member Current member NCBI NM_172618.2 NP_766206.1 Accepted alive Link to Nucleotide Sequence:NM_172618.2Link to Protein Sequence:NP_766206.1Re-query CCDS DB by Nucleotide ID:NM_172618Re-query CCDS DB by Protein ID:NP_766206Link to BLAST:NP_766206.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081336.1 612 Q8C726 612 100% 0 0
NP_766206.1 612 Q8C726 612 100% 0 0

Chromosomal Locations for CCDS 28599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30220373 30220570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30228800 30228878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30274854 30274961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30299531 30299720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30334223 30334332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30513556 30513675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30517104 30517323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30524713 30524977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30527302 30527665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30530154 30530338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGAGTAACAGCCACCCTCTTCGCCCCTTTACTGCAGTGGGGGAAATCGATCATGTGCACATTTTGTCTG
AGCATATTGGTGCCTTGTTGATTGGTGAAGAATATGGTGATGTCACGTTTGTTGTGGAAAAGAAGCACTT
TCCTGCCCACAGGGTAATTTTAGCAGCGAGGTGCCAATATTTTCGAGCATTACTGTATGGCGGGATGCGA
GAGTCGCAGCCCGAAGCAGAGATCCCTCTCCAAGACACCACGGCCGAGGCTTTCACGATGCTCCTCAGAT
ATATCTACACGGGGCGGGCGACGCTCACTGATGAGAAGGAGGAGGTGCTGCTGGACTTCCTGAGCCTGGC
TCACAAATACGGATTTCCAGAGCTGGAGGACTCTACTTCTGAGTATCTCTGCACCATACTGAACATTCAG
AATGTCTGTATGACCTTTGATGTTGCCAGTCTCTACTCGCTTCCCAAGTTAACTTGTATGTGCTGCATGT
TCATGGACAGAAATGCTCAGGAGGTGCTGGCCAGCGACGGCTTCCTCTCCCTGTCCAAGACAGCACTCCT
GAATATCGTCTTAAGAGATTCGTTTGCTGCTCCTGAGAAAGATATTTTCTTAGCCTTGTTAAACTGGTGT
AAGCACAATGCAAAAGAGAATCATGCTGAAATCATGCAGGCTGTGCGCTTACCTCTAATGAGCCTCACTG
AGCTTCTGAACGTCGTGAGGCCATCAGGACTCTTGTCTCCGGATGCTATTCTTGATGCCATCAAAGTGCG
GTCGGAGAGCCGGGATATGGACCTCAACTACAGAGGCATGCTCATACCTGAAGAAAACATTGCAACTATG
AAGTATGGGGCTCAGGTTGTGAAAGGAGAGCTGAAGTCGGCCTTGCTGGATGGTGACACTCAAAACTATG
ACTTGGATCATGGATTTTCCCGGCACCCCATTGATGATGACTGCCGCTCTGGCATTGAGATCAAGCTTGG
CCAGCCGTCCATTATAAACCACATACGTCTACTCCTGTGGGACCGTGACAGCCGGTCTTATTCCTACTTT
ATTGAAGTGTCCATGGACGAACTTGATTGGATCAGAGTGATCGATCACTCACATTACCTGTGTCGGTCTT
GGCAAAAGTTGTATTTCCCAGCCCGTGTCTGCAGGTATATCCGAATAGTTGGGACTCACAACACAGTGAA
CAAGATTTTCCACATTGTGGCTTTTGAATGCATGTTTACAAACAAAGCCTTCACCCTGGAGAAGGGCCTG
ATAGTTCCCCTGGAGAATGTGGCAACGATCGCAGATTGTGCCAGTGTGATTGAAGGAGTCAGTCGGAGCC
GGAATGCCTTGCTGAATGGGGACACTAAGAATTATGACTGGGACTCTGGCTACACGTGCCACCAGCTGGG
CAGTGGTGCCATTGTGGTTCAGCTGGCACAGCCATACATAATTGGCTCAATACGGTTATTACTCTGGGAC
TGCGATGATCGAAGCTACAGCTACTATGTTGAGGTTTCCACCAATCAGCAGCAGTGGACCATGGTGGCCG
ACAGAACGAAAGTGTCCTGCAAGTCCTGGCAGTCAGTCACTTTTGAAAGACAGCCTGCATCCTTCATCCG
AATCGTCGGGACACACAACACAGCAAATGAGGTGTTCCACTGTGTCCACTTTGAGTGTCCGGAGCAGCAG
AGCAACCAGAAGGAGGACAGCAGTGAGGAGCCAGGGACAGGGGACCCCAGCACCCCCAATCAGCAGCTCG
ACCCTCATGCACCACGGGCACCCAGCGCCAGCTCACTACCACCGAGTCCAGGCCCTAACTCACGCTCACC
CAACCAACAGAACCAATAA

Translation (612 aa):
MSNSHPLRPFTAVGEIDHVHILSEHIGALLIGEEYGDVTFVVEKKHFPAHRVILAARCQYFRALLYGGMR
ESQPEAEIPLQDTTAEAFTMLLRYIYTGRATLTDEKEEVLLDFLSLAHKYGFPELEDSTSEYLCTILNIQ
NVCMTFDVASLYSLPKLTCMCCMFMDRNAQEVLASDGFLSLSKTALLNIVLRDSFAAPEKDIFLALLNWC
KHNAKENHAEIMQAVRLPLMSLTELLNVVRPSGLLSPDAILDAIKVRSESRDMDLNYRGMLIPEENIATM
KYGAQVVKGELKSALLDGDTQNYDLDHGFSRHPIDDDCRSGIEIKLGQPSIINHIRLLLWDRDSRSYSYF
IEVSMDELDWIRVIDHSHYLCRSWQKLYFPARVCRYIRIVGTHNTVNKIFHIVAFECMFTNKAFTLEKGL
IVPLENVATIADCASVIEGVSRSRNALLNGDTKNYDWDSGYTCHQLGSGAIVVQLAQPYIIGSIRLLLWD
CDDRSYSYYVEVSTNQQQWTMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQ
SNQKEDSSEEPGTGDPSTPNQQLDPHAPRAPSASSLPPSPGPNSRSPNQQNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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