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Report for CCDS28586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28586.1 Public Mus musculus 17 Bnip5 23 108 98 CCDS HistoryNCBI Gene:207819Re-query CCDS DB by CCDS ID:28586.1Re-query CCDS DB by GeneID:207819See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062357.5 ENSMUSP00000050646.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062357.5Link to Ensembl Protein Viewer:ENSMUSP00000050646.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062357Re-query CCDS DB by Protein ID:ENSMUSP00000050646
Original member Current member NCBI NM_172450.3 NP_766038.1 Accepted alive Link to Nucleotide Sequence:NM_172450.3Link to Protein Sequence:NP_766038.1Re-query CCDS DB by Nucleotide ID:NM_172450Re-query CCDS DB by Protein ID:NP_766038Link to BLAST:NP_766038.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766038.1 669 Q8CC96 669 100% 0 0

Chromosomal Locations for CCDS 28586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28898888 28898923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28899483 28899746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28901131 28901195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28901950 28902075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28902773 28903022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28903247 28903308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28904516 28904650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28905255 28905495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28905691 28905755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28908268 28908387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28909292 28909872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28915169 28915233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGCCCAGATCAAGGAATCCCAGCCAAGGGATGCCCCGGGACAGCAGCGACTCCTGTGGTCTGAGCCCGG
TGGAGACCCCGAAGGGAAAAAAGAGAGCCCGATCCTTGGACCGGCAGGTTCCCAGGAAGAAGGACCCCGA
GTCCTCGAACACCAGGTGCCCCTCCAGCGCCACCTGCAGGAGGACAGCCAGCGATGGAGCCAGAAGTTCT
GAGAGCCCATCTCACTTTGCAGAGGCACAGGGCGCAACCGCCGCAGCCCTCCCTCCGGGAGAGGGGCGCG
GATTTCTCCCCAGTGAGCAGGGCCCCCCAGAAGACACCAAGAAAGAGAGGCTTCCGAGGGAGGCCCAGCA
GAGCTGGCTGAGGCTGGTGCTGAATATCTTACTCATGAGGATAGAAGAGCCCAGAGAAAAGGCCAGCAGG
GCGTCAAAGGGAAAAGGGGACCTACCAGAGGCAGCCGAGGAGCCAGCCCTCAGGAAGAAATCGCACGAGA
AGAGAACCAGCCGCAAGAAGCACAGTCACAGGAAACCTATAGCAGAAGAGCCTCCGGGTCCCCAGACCGC
TGAAGCGCAAGGCCGAGAGGACGTACCGCCCAGTTTGGCTGCCTCAAGCGCCCCCCATGAGATAGCCCTG
GGGCTGATCTGCAGGGGGGGACCAGATTCTGACCTTCCTCAGGCCTTGCCCACTGAAGGAGACCATGCTG
AAACCCCAGACAGCTTTGGCCAAGCCTCAGGTCCTCCATTAGAAGAGGACCCCAGGAAGCCTGACCAGGA
TGATGTCATCTGGCAGATTGTGGAATTGCTCAAGAAAGCTGGAGACCAACTGGAAGAAGAGCAAGTGCAA
ATCCCTCAGCCAGAAGCGGTTCCTCCACGAAAGCCAACGCCACTCCCCAGGAAGAAATCCCAGGAGAAGA
AGTCCAGCCTGAAGAGAGTCTTATCCCTCAAGAAGCCTGCCTCTGAGGAACCCAAGAGAGTCGGCACAGC
CACTACCCTGGGCCCAGAAACCCGGCCCAAGAGGCCCAGCTTCCTACCCCTGTGTGTTAGTAGCCAGCGA
GCTTCCACCTCCAGCAGCCTTGACTTGGAGGCGCCTGAGTTCCAAGAGGTCCCGTCTGTAGATGGTGGAG
GCTCCCATCCCTCTGAGCTCCACACACCAGCTGCCATATTTCAGGGACCCGAGGAGAAGCCACTGCTGGA
CAGAGCCTCCGAATCCAGAGAATTCAGGCGGAAGATCCTGGTCCTGCTCCAGAGTGCAGAGGACGAGAGG
GGAGAGCAGGAAGCTCAAGCGCAGGAGGCAGAGAAGGCCGGAGAAAACCCGACCCCAGCCGGCAAGGTGA
AGTCCCAGGTGAAGAAGTCTAACCTCCGGAGAGCCTTTTCTCTCAGGAAACACAGCTCCAAGGATTCTAA
GAAAACAGAGGCTTCAGGGACTCCAGGCTCTGGCAGCCTAGAGGCCCGGCCACCCAAGAAGCACGGCTTC
CTGCCCATGTGTGTCAGTGGCCACAGAGCTTCCATCTCCAGCAGCCCAGAAAGCCTGGAGTTCCAGAAGA
CGGAGGCTGCAGGAGGGGCACCAGCTGGGTCCCCAGGAGCGCCTTTCCAGGCCAGGAGTCACACACCAGA
TGAGGGGCCTTCACCAGAGCGAGCCTGGGAATCTAAGGAGTTCATGATCCAAAAGCTCGTGGCGAGTCTC
CAAGAGGTGGACAGGGATCTAGGGAGGCAGATCCGGAAGTACCCCAGCTTCAAGCGTTTTTTTAACGAGT
TCTCGGATGCCTCCCTCAGGAAGCTGGTGGCTACCTTAGAGAGACAGAAGGCCAGCCTCTCAGAGGAAGG
CCGGAGCCTCGCTAACAGGCCGCCACCCTGTGCCTTTGGCACACTGAACAAGTTTGCGGCCACCCGCAGC
TGCACCATCTGCACCCTGATGCAGTCCAGAGGCGAATACAAGGGACACAGTTACGCCCACTTCCTGTCCA
GGAAGGCCGAGCAGGACATCACGAATCTGGATAGCCAGAGTCCGGACTGA

Translation (669 aa):
MPRSRNPSQGMPRDSSDSCGLSPVETPKGKKRARSLDRQVPRKKDPESSNTRCPSSATCRRTASDGARSS
ESPSHFAEAQGATAAALPPGEGRGFLPSEQGPPEDTKKERLPREAQQSWLRLVLNILLMRIEEPREKASR
ASKGKGDLPEAAEEPALRKKSHEKRTSRKKHSHRKPIAEEPPGPQTAEAQGREDVPPSLAASSAPHEIAL
GLICRGGPDSDLPQALPTEGDHAETPDSFGQASGPPLEEDPRKPDQDDVIWQIVELLKKAGDQLEEEQVQ
IPQPEAVPPRKPTPLPRKKSQEKKSSLKRVLSLKKPASEEPKRVGTATTLGPETRPKRPSFLPLCVSSQR
ASTSSSLDLEAPEFQEVPSVDGGGSHPSELHTPAAIFQGPEEKPLLDRASESREFRRKILVLLQSAEDER
GEQEAQAQEAEKAGENPTPAGKVKSQVKKSNLRRAFSLRKHSSKDSKKTEASGTPGSGSLEARPPKKHGF
LPMCVSGHRASISSSPESLEFQKTEAAGGAPAGSPGAPFQARSHTPDEGPSPERAWESKEFMIQKLVASL
QEVDRDLGRQIRKYPSFKRFFNEFSDASLRKLVATLERQKASLSEEGRSLANRPPPCAFGTLNKFAATRS
CTICTLMQSRGEYKGHSYAHFLSRKAEQDITNLDSQSPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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