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Report for CCDS28543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28543.1 Public Mus musculus 17 Decr2 23 108 98 CCDS HistoryNCBI Gene:26378Re-query CCDS DB by CCDS ID:28543.1Re-query CCDS DB by GeneID:26378See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040907.7 ENSMUSP00000045621.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040907.7Link to Ensembl Protein Viewer:ENSMUSP00000045621.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040907Re-query CCDS DB by Protein ID:ENSMUSP00000045621
Original member NCBI NM_011933.2 NP_036063.1 Updated not alive Link to Nucleotide Sequence:NM_011933.2Link to Protein Sequence:NP_036063.1Re-query CCDS DB by Nucleotide ID:NM_011933Re-query CCDS DB by Protein ID:NP_036063
Current member NCBI NM_011933.3 NP_036063.1 Accepted alive Link to Nucleotide Sequence:NM_011933.3Link to Protein Sequence:NP_036063.1Re-query CCDS DB by Nucleotide ID:NM_011933Re-query CCDS DB by Protein ID:NP_036063Link to BLAST:NP_036063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036063.1 292 Q9WV68 292 100% 0 0

Chromosomal Locations for CCDS 28543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26082876 26083093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26083576 26083680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26083845 26083938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26084011 26084135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26087324 26087459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26088022 26088073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26088929 26088997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26089964 26090043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCCCAGCCGCCGCCCGACGTTGAGGGGGATGACTGTCTTCCTGAATACCACCATCTCTTCTGCCCGG
ATCTTCTCCAGGACAAAGTGGCCTTTATCACAGGTGGTGGTTCTGGGATTGGCTTCCGGATCGCAGAGAT
TTTCATGAGGCATGGCTGCCACACTGTCATCGTCGGCAGGAGTCTGCAGAAAGTGACCACGGCTGCTAAG
AAGTTGGTTGCTGCCACCGGAAAGCGGTGCCTCCCTCTGTCTATGGATGTCCGAGTTCCCCCAGAGGTCA
TGACTGCTGTGGATCAAGCGCTGCAAGAATTTGGCAAAATCAACATCCTCATTAACTGTGCAGCTGGAAA
CTTCCTATGCCCTGCCAGTGCTTTGTCTTTCAATGCCTTTAAGACCGTGGTTGACATTGACACCATCGGT
ACCTTCAATGTGTCTAGTGTGCTTTACAAGAAGTTCTTCCGGGACCATGGAGGAGTGATTGTGAACATTA
CTGCCACCCTCAGTATGAGGGGGCAGGTGCTACAGCTACATGCAGGCGCTGCCAAAGCAGCTGTGGATGC
TATGACGCGACACTTGGCTGTGGAATGGGGTCCCCAGAATATCCGTGTCAACAGCCTGGCTCCTGGTGCC
ATCAGTGGCACTGAGGGTTTAAGGCGATTAAGAGGCTCCAATGCCAGTTCGAAATTAAAGCATTTTTCAA
ATCCTATTCCAAGACTTGGGACCAAGACAGAGATCGCTCACAGCGTGCTGTACCTGGCCAGCCCTCTGGC
TTCCTATGTCTCAGGTATCGTGCTGGTGGTTGATGGTGGAAGCTGGATGACATTCCCCAATGGCATCAAG
CAACTGCTAGAGTTTGAATCCTTCTCTGCTAAGCTGTAG

Translation (292 aa):
MAQPPPDVEGDDCLPEYHHLFCPDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRSLQKVTTAAK
KLVAATGKRCLPLSMDVRVPPEVMTAVDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIG
TFNVSSVLYKKFFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQNIRVNSLAPGA
ISGTEGLRRLRGSNASSKLKHFSNPIPRLGTKTEIAHSVLYLASPLASYVSGIVLVVDGGSWMTFPNGIK
QLLEFESFSAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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