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Report for CCDS28540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28540.1 Under review, update Mus musculus 17 Capn15 23 108 98 CCDS HistoryNCBI Gene:50817Re-query CCDS DB by CCDS ID:28540.1Re-query CCDS DB by GeneID:50817See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041641.8 ENSMUSP00000039528.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041641.8Link to Ensembl Protein Viewer:ENSMUSP00000039528.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041641Re-query CCDS DB by Protein ID:ENSMUSP00000039528
Original member Current member EBI ENSMUST00000212149.1 ENSMUSP00000148718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212149.1Link to Ensembl Protein Viewer:ENSMUSP00000148718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212149Re-query CCDS DB by Protein ID:ENSMUSP00000148718
Original member NCBI NM_015830.2 NP_056645.1 Updated not alive Link to Nucleotide Sequence:NM_015830.2Link to Protein Sequence:NP_056645.1Re-query CCDS DB by Nucleotide ID:NM_015830Re-query CCDS DB by Protein ID:NP_056645
Current member NCBI NM_015830.3 NP_056645.2 Pending alive Link to Nucleotide Sequence:NM_015830.3Link to Protein Sequence:NP_056645.2Re-query CCDS DB by Nucleotide ID:NM_015830Re-query CCDS DB by Protein ID:NP_056645Link to BLAST:NP_056645.2

Chromosomal Locations for CCDS 28540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25959556 25959733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25959807 25959985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25960065 25960231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25960337 25960563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25960650 25960811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25961720 25961872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25961954 25962079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25962671 25962894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25962962 25963145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25963247 25963455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25964027 25965505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3288 nt):
ATGGCCACAGTTGGGGAGTGGTCCTGTGCACGCTGCACCTTCCTGAACCCTGCCGGCCAACGCCAGTGCT
CCATCTGTGAGGCCCCCCGACATAAGCCAGATCTTGACCAGATCCTTCGTCTCAGCGTAGAGGAGCAGAA
ATGGCCCTGTGCACGCTGTACATTCCGGAACTTTTTAGGCAAAGAGGCTTGCGAAGTGTGTGGCTTTACC
CCAGAGCCTGTTCCTGGAGCCCCTCTGCTGCCCATTATCAATGGGGTCCTGCCCAAGCCACCCACCATAC
TGGTGGAGCCAAAGGGCAGCGGTAAGGAGGAAGCAGGCCCAGTGCGGACAGCAGGGCTAGTGGCCACAGA
GCCAGCCAGAGGGCGCCCTGAAGGAGAAGAAGAAAGAGAAGAAAGAGGAGAAGAAGAAGAAAAGGAGCAG
GAGGGCGAGGGGGAGAGGGCAGAGCCTGGCAGTGGCTGGGCATGCCAGCGCTGCACACTGCATAACACAC
CAGTGGCCAGCTCTTGTTCTGCCTGTGGGGGACCCCGGAAACTGTCATTGCCTCGCATCCCCCCAGAAGC
CCTGGTGGTTCCCGAGGTTGTAGCCCCTACTGGCTTTCATGTCGTTCCTGCTCCATCCCAGCCTGTCCTC
CCTGGGGAAGGTGCTGAGGCTGATTCTCCTTCTACCAGCCAGGGTCCCACCTCCACTGACCAGGAGCCAC
CCAGGGTACCACTCTTCAGCCCCTTCTCACCCACCCTACAGAACAACCCTGTACCCAGAAGCCGCCGGGA
GGTCCCCCCTCAGCTTCAGCCACCTGTGCCTGAGGCTGTTCAGTCCTCAGCCTCCACAAGCTCCAAAGGG
CCCCAGCAGGGCCCTGGAAGAGCTGCAGCTGGGGCCTCCCGCCTCGCTGAGCTACTCTCAGGCAAGGAGC
TGCTGCCAGGCAAGCGACTGAGTGTGTTGGAGGAGGAGGTCCCAGAGAGCAGCCCTGCCCGCTGTGAGTC
GTGCAGTGATGTCATTGACCTAGCTGGGGACATTGTGCGCTACACACCTGCCAGTCCCTCCAGCCCTGAC
TTCACCACCTGGTCATGTGCCAGGTGTACACTTAGGAACCCCACAACAGCCCCCAGGTGTTCAGTGTGTG
GTGGCTCCAAGCTGCATGGTTTCCAGGAGCACAGTGAACCCCCTACCCACTGCCCTGACTGTGGTGCCAA
CAAGCCTGGCCCCTGTGTTGGCTCCTGTGGACGAGCTCCCTCAGCACACAAGGCTGTCCGTCTCTTGCCC
GATCGCCCGGGTCAGTGGGCCTGCCCGGCCTGTACTCTGATCAACACACCTCGGGCCAAGCACTGTGCAG
CCTGCCATACACCACAGCTTCTGGTGACCCAGTGCCGGGGGGCTACCCCCCTGAGGCGCAGGGAGAGTAT
GCATGTGGAGAAGCGGAGGCAGACAGATGAGGGCGAGGCCAAGGCACTCTGGGAGAACATAGTGGCTTTC
TGCAGAGAGAATAGTGTGAACTTTGTGGATGACAGCTTCCCCCCCGGGCCTGCATCTGTCGGCTTCCCAG
TGGGCGACAGCGTCCAGCAGCGAGTGAAACAGTGGCTGAGGCCCCACGAAATCAACTGCTCTGTCTTCAG
GGACCACGGCACTCCGTGGTCAGTCTTCCACACCCTGAGGCCCTCTGACATCCTACAGGGGCTGCTGGGG
AACTGCTGGTTCCTGAGTGCGTTGGCAGTACTGGCTGAACGTCCCGACCTCGTGGAGAGGGTGATGGTCA
CACGTAGCCTATGTGCAGAGGGTGCCTACCAGGTGCGGCTGTGCAAAGATGGCACGTGGACAACAGTGCT
GGTGGATGACATGCTGCCCTGTGATGAGGCTGGGTTTTTGCTCTTCTCACAGGCACAGCGGAAGCAGTTA
TGGGTGGCCCTCATTGAGAAGGCACTGGCCAAGCTGCACGGCTCCTACTTTGCCCTCCAGGCAGGGCGTG
CCATTGAAGGTCTGGCCACACTAACCGGAGCCCCCTGTGAGAGCCTGGCGCTGCAGGTCAGCTCCACTAA
CCCCCGAGAGGAGCCTGTTGACACTGATCTCATCTGGGCCAAAATGCTGAGTTCTAAAGAGGCTGGGTTC
CTCATGGGTGCGTCCTGCGGGGGAGGTAACATGAAGGTAGATGATGCTGCTTACGAGAGCCTGGGTCTGC
GCCCCCGCCATGCTTACTCTGTCTTGGATGTTCGTGATGTTCAGGGCTCCAGGCTCCTGCGACTCCGGAA
CCCATGGGGCCGTTTCTCCTGGAATGGCAGTTGGTCAGATGAGTGGCCACACTGGCCAGGGCACCTGCGA
GCTGAGCTCATGCCACACGGCAGCAGTGAGGGTGTCTTCTGGATGGAGTATAGTGACTTTATCAGGTACT
TCGACTCTGTGGACATCTGCAAGGTGCACTCAGACTGGCAAGAGGCACGGGTTCAGGGCTGTTTCCCAAG
CACTGCCGGTGGGCCTGTGGGTGTGACAGCACTCACAGTGCTGGAGCGTGCCTCACTGGAGTTTGCCCTC
TTCCAGGAGGGCAGCAGGCGCTCGGATTCAGTAGACAGCCACCTCCTGGATCTGTGCATCCTAGTGTTCC
GGGCCACTTTTGGCACTGGTGGCCGCCTGAGCCTGGGCCGCCTCTTGGCCCACAGCAAACGTGCTGTTAA
GAAGTTTGTGAACTGTGATGTCATGCTGGAGCCTGGGGAGTATGCTGTGGTATGCTGTGCCTTCAACCAC
TGGAACCCTGCTCCACCAGGGCCCCCTGCCCAGGCCTCCAGCCCCTCAGCAGGGGTCCCCCGAGGTGCCC
CCGAGCCACCCGGCCACGTACTCGCAGTGTACAGCTCCAGGCTGGTCATGGTGGAGCCGGTGGAGGCGCA
GCCAACCACACTGGCCGATGCCATCATCCTGCTCACTGAGAGCCGGGGCGAGCGGCATGAGGGTCGAGAG
GGCATGACCTGCTATTACCTGACTCATGGCTGGGCGGGACTCATCGTGGTAGTGGAGAACCGGCACCCCA
AGTCCTACCTGCATGTGCAATGTGACTGCACCGACAGCTTCAATGTGGTGTCCACACGTGGCAGCCTGCG
CACCCAGGACAGTGTACCACCCCTGCACAGGCAGGTCCTGGTGATCTTGTCTCAGCTGGAAGGCAATGCT
GGATTCTCTATCACCCATCGCCTGGCACATCGCAAGGCAGCCCAGGCCTTCCTCAGTGACTGGACAGCCT
CTAGGGGTACCCACAGCCCCCCACTCACACCTGATGTGGCCGGCCTACATGGACCCCGGCCACTGTGA

Translation (1095 aa):
MATVGEWSCARCTFLNPAGQRQCSICEAPRHKPDLDQILRLSVEEQKWPCARCTFRNFLGKEACEVCGFT
PEPVPGAPLLPIINGVLPKPPTILVEPKGSGKEEAGPVRTAGLVATEPARGRPEGEEEREERGEEEEKEQ
EGEGERAEPGSGWACQRCTLHNTPVASSCSACGGPRKLSLPRIPPEALVVPEVVAPTGFHVVPAPSQPVL
PGEGAEADSPSTSQGPTSTDQEPPRVPLFSPFSPTLQNNPVPRSRREVPPQLQPPVPEAVQSSASTSSKG
PQQGPGRAAAGASRLAELLSGKELLPGKRLSVLEEEVPESSPARCESCSDVIDLAGDIVRYTPASPSSPD
FTTWSCARCTLRNPTTAPRCSVCGGSKLHGFQEHSEPPTHCPDCGANKPGPCVGSCGRAPSAHKAVRLLP
DRPGQWACPACTLINTPRAKHCAACHTPQLLVTQCRGATPLRRRESMHVEKRRQTDEGEAKALWENIVAF
CRENSVNFVDDSFPPGPASVGFPVGDSVQQRVKQWLRPHEINCSVFRDHGTPWSVFHTLRPSDILQGLLG
NCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDDMLPCDEAGFLLFSQAQRKQL
WVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLALQVSSTNPREEPVDTDLIWAKMLSSKEAGF
LMGASCGGGNMKVDDAAYESLGLRPRHAYSVLDVRDVQGSRLLRLRNPWGRFSWNGSWSDEWPHWPGHLR
AELMPHGSSEGVFWMEYSDFIRYFDSVDICKVHSDWQEARVQGCFPSTAGGPVGVTALTVLERASLEFAL
FQEGSRRSDSVDSHLLDLCILVFRATFGTGGRLSLGRLLAHSKRAVKKFVNCDVMLEPGEYAVVCCAFNH
WNPAPPGPPAQASSPSAGVPRGAPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLTESRGERHEGRE
GMTCYYLTHGWAGLIVVVENRHPKSYLHVQCDCTDSFNVVSTRGSLRTQDSVPPLHRQVLVILSQLEGNA
GFSITHRLAHRKAAQAFLSDWTASRGTHSPPLTPDVAGLHGPRPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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