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Report for CCDS28534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28534.1 Public Mus musculus 17 Rhbdl1 23 108 98 CCDS HistoryNCBI Gene:214951Re-query CCDS DB by CCDS ID:28534.1Re-query CCDS DB by GeneID:214951See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026831.13 ENSMUSP00000026831.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026831.13Link to Ensembl Protein Viewer:ENSMUSP00000026831.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026831Re-query CCDS DB by Protein ID:ENSMUSP00000026831
Original member Current member NCBI NM_144816.1 NP_659065.1 Accepted alive Link to Nucleotide Sequence:NM_144816.1Link to Protein Sequence:NP_659065.1Re-query CCDS DB by Nucleotide ID:NM_144816Re-query CCDS DB by Protein ID:NP_659065Link to BLAST:NP_659065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659065.1 373 Q8VC82 373 100% 0 0

Chromosomal Locations for CCDS 28534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25834785 25835056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25835137 25835197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25835277 25835377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25835470 25835582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25835745 25835893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25835969 25836193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25836411 25836572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25836988 25837026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGACAGGAGCTCGCTGCTGCAGCTCATTCAGGAGCAGCAGCTGGATCCTGAGAACACAGGCTTCATCG
GTGCGGACACCTTCGCTGGTCTGGTACACAGCCATGAGCTGCCCCTGGACCCCACCAAGTTGGACATGTT
GGTGGCTCTGGCTCAGAGCAACGAGCGGGGCCAGGTCTGCTACCAGGAGCTGGTGGACCTGATCAGCAGC
AAGCGTTCCAGCAGCTTCAAGAGAGCCATTGCTAACGGACAGCGGGCACTGCCCCGAGACGGACTGCTAG
ATGAGCCAGGCCTGAGTGTCTACAAGCGGTTTGTGCGCTATGTGGCCTACGAGATCCTGCCCTGCGAGGT
GGACCGCCGCTGGTACTTCTACAGGCACCGCACCTGCCCACCCCCTGTGTTCATGGCCTCGGTCACTCTT
GCCCAGATCATCGTGTTCCTGTGCTACGGGGCACGTCTCAACAAGTGGGTGCTCCAGACCTACCACCCTG
AATATATGAAGAGCCCTCTGGTGTATCACCCAGGACACCGTGCTCGGGCATGGCGCTTCCTCACCTACAT
GTTCATGCATGTCGGGCTGGAGCAGCTAGGGTTCAATGCCCTCCTGCAGCTGATGATCGGTGTGCCCCTG
GAGATGGTACATGGCGTGCTTCGCATCAGCCTGCTCTACCTGGCGGGCGTGCTGGCAGGCTCCCTGACTG
TCTCTATCACAGATATGCGTGCCCCCGTGGTAGGGGGCTCTGGAGGGGTCTATGCCCTGTGCTCAGCACA
CCTGGCCAATGTTGTCATGAACTGGGCTGGGATGCGGTGTCCATACAAGCTGCTGAGGATGGTGCTGGCT
CTGGTGTGCATGAGTTCCGAAGTGGGCCGGGCTGTGTGGCTACGCTTCTCCCCACCACTGCCTGCCTCAG
GCCCACAGCCCAGCTTCATGGCACACCTGGCTGGTGCAGTGGTAGGTGTAAGCATGGGCCTTACCATCCT
TCGGAGCTATGAGGAACGCCTGAGGGACCAGTGCGGCTGGTGGGTGGTGCTACTTGCCTATGGCACCTTC
CTGCTTTTCGCCATCTTCTGGAACGTCTTTGCCTATGACCTGCTGGGTGCCGATATCCCCCCTCCACCTT
GA

Translation (373 aa):
MDRSSLLQLIQEQQLDPENTGFIGADTFAGLVHSHELPLDPTKLDMLVALAQSNERGQVCYQELVDLISS
KRSSSFKRAIANGQRALPRDGLLDEPGLSVYKRFVRYVAYEILPCEVDRRWYFYRHRTCPPPVFMASVTL
AQIIVFLCYGARLNKWVLQTYHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPL
EMVHGVLRISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLA
LVCMSSEVGRAVWLRFSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGWWVVLLAYGTF
LLFAIFWNVFAYDLLGADIPPPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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