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Report for CCDS28520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28520.1 Public Mus musculus 17 Sstr5 23 108 98 CCDS HistoryNCBI Gene:20609Re-query CCDS DB by CCDS ID:28520.1Re-query CCDS DB by GeneID:20609See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28520.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051864.4 ENSMUSP00000051085.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051864.4Link to Ensembl Protein Viewer:ENSMUSP00000051085.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051864Re-query CCDS DB by Protein ID:ENSMUSP00000051085
Original member Current member EBI ENSMUST00000165183.9 ENSMUSP00000128787.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165183.9Link to Ensembl Protein Viewer:ENSMUSP00000128787.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165183Re-query CCDS DB by Protein ID:ENSMUSP00000128787
Original member Current member NCBI NM_001191008.1 NP_001177937.1 Accepted alive Link to Nucleotide Sequence:NM_001191008.1Link to Protein Sequence:NP_001177937.1Re-query CCDS DB by Nucleotide ID:NM_001191008Re-query CCDS DB by Protein ID:NP_001177937Link to BLAST:NP_001177937.1
Original member Current member NCBI NM_011425.3 NP_035555.1 Accepted alive Link to Nucleotide Sequence:NM_011425.3Link to Protein Sequence:NP_035555.1Re-query CCDS DB by Nucleotide ID:NM_011425Re-query CCDS DB by Protein ID:NP_035555Link to BLAST:NP_035555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177937.1 362 O08858 362 100% 0 0
NP_035555.1 362 O08858 362 100% 0 0

Chromosomal Locations for CCDS 28520.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25491165 25492253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGAGCCCCTCTCTTTGACTTCCACACCTAGCTGGAATGCCTCAGCTGCTTCCAGCAGTAGCCATAACT
GGTCACTAGTGGACCCGGTGTCACCCATGGGAGCCCGGGCGGTATTAGTGCCTGTGCTCTACTTGTTGGT
ATGCACCGTGGGACTGGGTGGAAACACACTGGTCATCTATGTGGTGTTGCGGTACGCCAAGATGAAGACA
GTTACTAACGTGTATATCCTGAACCTGGCCGTGGCTGACGTGTTGTTTATGTTGGGGCTTCCTTTCCTGG
CAACGCAGAATGCTGTCTCCTACTGGCCCTTTGGCTCCTTCTTGTGCCGCCTGGTCATGACGCTGGACGG
CATCAACCAGTTCACCAGTATCTTCTGCCTGATGGTCATGAGTGTCGACCGCTACCTGGCCGTGGTCCAC
CCTCTCCGCTCAGCCCGGTGGCGTCGCCCACGGGTAGCCAAGCTGGCTAGTGCTGCCGTCTGGGTCTTCT
CGCTGCTCATGTCTCTGCCGCTCTTGGTCTTTGCGGATGTCCAGGAGGGCTGGGGCACCTGCAACCTGAG
CTGGCCAGAGCCTGTGGGACTGTGGGGTGCAGCCTTCATCACTTACACGTCTGTGCTGGGCTTCTTTGGG
CCCCTGCTGGTCATCTGCTTGTGCTATTTGCTCATCGTAGTGAAGGTGAAGGCTGCAGGTATGCGTGTGG
GCTCCTCACGGCGGAGGCGCTCAGAACGCAAGGTGACTCGCATGGTGGTGGTAGTGGTGCTGGTGTTCGT
GGGCTGCTGGCTGCCTTTCTTCATCGTCAACATCGTCAACCTGGCCTTCACGCTACCCGAGGAGCCCACC
TCTGCCGGCCTCTACTTCTTTGTGGTGGTCCTGTCTTATGCCAATAGCTGTGCCAACCCCCTGCTCTATG
GCTTTCTCTCTGATAACTTCCGCCAGAGTTTCCGGAAGGCTCTGTGCCTACGTAGAGGATACGGTGTGGA
GGATGCAGATGCCATAGAGCCACGGCCAGACAAGAGTGGGCGGCCACAGACCACACTGCCCACACGCAGC
TGTGAGGCCAACGGGCTCATGCAGACCAGCAGGCTTTGA

Translation (362 aa):
MEPLSLTSTPSWNASAASSSSHNWSLVDPVSPMGARAVLVPVLYLLVCTVGLGGNTLVIYVVLRYAKMKT
VTNVYILNLAVADVLFMLGLPFLATQNAVSYWPFGSFLCRLVMTLDGINQFTSIFCLMVMSVDRYLAVVH
PLRSARWRRPRVAKLASAAVWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFG
PLLVICLCYLLIVVKVKAAGMRVGSSRRRRSERKVTRMVVVVVLVFVGCWLPFFIVNIVNLAFTLPEEPT
SAGLYFFVVVLSYANSCANPLLYGFLSDNFRQSFRKALCLRRGYGVEDADAIEPRPDKSGRPQTTLPTRS
CEANGLMQTSRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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