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Report for CCDS28461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28461.1 Public Mus musculus 17 Paqr4 23 108 98 CCDS HistoryNCBI Gene:76498Re-query CCDS DB by CCDS ID:28461.1Re-query CCDS DB by GeneID:76498See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024702.4 ENSMUSP00000024702.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024702.4Link to Ensembl Protein Viewer:ENSMUSP00000024702.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024702Re-query CCDS DB by Protein ID:ENSMUSP00000024702
Original member Current member NCBI NM_023824.3 NP_076313.1 Accepted alive Link to Nucleotide Sequence:NM_023824.3Link to Protein Sequence:NP_076313.1Re-query CCDS DB by Nucleotide ID:NM_023824Re-query CCDS DB by Protein ID:NP_076313Link to BLAST:NP_076313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076313.1 273 Q9JJE4 273 100% 0 0

Chromosomal Locations for CCDS 28461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23737566 23737999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23738140 23738361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23739860 23740025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGCATTCCTGACCGGGCCTCGTCTCCTGGACTGGGCTAGCTCGCCGCCGCACCTGCAGTTCAATAAGT
TC
GTATTAACCGGCTACCGGCCGGCCAGCAGCGGCTCGGGCTGTCTGCGCAGCCTTTTCTACCTACACAA
C
GAGCTGGGCAACATCTACACACACGGGCTAGCCCTGCTGGGCTTCCTGGTGTTGGTGCCAATGACCATG
CCC
TGGAGTCAGCTGGGCAAGGATGGCTGGCTAGGAGGTACACACTGTGTGGCTTGCCTGGTGCCCCCTG
CA
GCCTCTGTGCTGTATCACCTCTTCATGTGCCACCAAGGAGGCAGTCCTGTGTACACCCGGCTCCTTGC
C
TTGGATATGTGTGGAGTCTGCCTTGTCAACACCCTTGGAGCCCTGCCCATCATCCACTGCACTCTGGCC
TGC
AGACCGTGGCTTCGCCCAGCTGCCCTGATGGGTTACACTGCACTGTCAGGTGTAGCCGGCTGGAGAG
CT
CTCACTGCCCCCTCCACCAGTGCCCGGCTTCGAGCCTTTGGTTGGCAAGCTGGGGCCCGCCTGCTGGT
G
TTTGGGGCCCGTGGAGTGGGGCTGGGCTCAGGGGCTCCAGGCTCTCTGCCCTGCTACCTGCGCATGGAC
GCA
CTGGCTCTGCTTGGAGGGCTGGTGAATGTGGCACGCCTGCCAGAGCGGTGGGGGCCTGGTCGCTTCG
AC
TACTGGGGCAACTCCCACCAGATCATGCACTTGCTGAGTGTGGGCTCCATCCTCCAGCTCCATGCTGG
G
GTTGTGCCTGACCTGCTCTGGGCTGCACACCATGCCTGTCCCCCAGACTGA


Translation (273 aa):
MAFLTGPRLLDWASSPPHLQFNKFVLTGYRPASSGSGCLRSLFYLHNELGNIYTHGLALLGFLVLVPMTM
P
WSQLGKDGWLGGTHCVACLVPPAASVLYHLFMCHQGGSPVYTRLLALDMCGVCLVNTL
GALPIIHCTLA
C
RPWLRPAALMGYTALSGVAGWRALTAPSTSARLRAFGWQAGARLLVFGARGVGLGSGAPGSLPCYLRMD
A
LALLGGLVNVARLPERWGPGRFDYWGNSHQIMHLLSVGSILQLHAGVVPDLLWAAHHACPPD




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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