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Report for CCDS28450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28450.1 Public Mus musculus 17 Zfp13 23 108 98 CCDS HistoryNCBI Gene:22654Re-query CCDS DB by CCDS ID:28450.1Re-query CCDS DB by GeneID:22654See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057029.4 ENSMUSP00000054595.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057029.4Link to Ensembl Protein Viewer:ENSMUSP00000054595.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057029Re-query CCDS DB by Protein ID:ENSMUSP00000054595
Original member NCBI NM_011747.3 NP_035877.1 Updated not alive Link to Nucleotide Sequence:NM_011747.3Link to Protein Sequence:NP_035877.1Re-query CCDS DB by Nucleotide ID:NM_011747Re-query CCDS DB by Protein ID:NP_035877
Current member NCBI NM_011747.4 NP_035877.1 Accepted alive Link to Nucleotide Sequence:NM_011747.4Link to Protein Sequence:NP_035877.1Re-query CCDS DB by Nucleotide ID:NM_011747Re-query CCDS DB by Protein ID:NP_035877Link to BLAST:NP_035877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035877.1 505 P10754-2 505 100% 0 0

Chromosomal Locations for CCDS 28450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23576057 23577111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23580112 23580232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23580771 23580862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23581078 23581270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23585438 23585494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGTCTGCAGACAGTCAAAGCATCGCGGCTACTGAGAACGAGGAGAAATCCCATGAGGTCCCAGGTAATG
TGCAACACTGTGGAGACATGCTCTCTGGACAGGAGGAGACAGTGCCCTTGGGAACCTCTCAGGAGTCAAC
ACACATCAAGGCAGAGCCAGAAGAGCCACACAGTGAGGGGGCATCACGGGAGGACAGGACTCCAGGAACA
CAGCGCTGGATGTCCCCGTGTCCTGGCCCTAAGGACAAAGTTGTTCCTTCTCCCTGGACTCCTGTACTGT
CCCGAGGGGGACGGACCAGAGAGCGAAAGATGGCTGCTGCACTCCTTACTGCCTGGTCCCAGATGCCGGT
GACCTTTGAGGATGTGGCCCTGTATCTCTCCCAGGAGGAGTGGGGAAGGCTGGACCACACACAGCAAAAT
TTCTACAGAGATGTACTACAGGGGAAAAACGGGCTGGCTTTGGGAGCCGTGGAAATGGGGAAGGTGGTTC
CAGCCTTGGCCGTCGCAACCCTAGAGGACACAAAATCGATAAGGACTAGGGCCAGGTGGGCCCCGGGGGA
AGACCCAAAGTGTGGTCAGCACGTGGCTAGTGGCCCAGGTACAAAGCTGACCAGAGACACTGGGAAAGCT
GGTCAGCTAAAGCCAGCCCCATCTGAATCACGTCCTCTCAAGACCCCAGAGGACAGCGGCCCAGAGAAAC
CCAGTGAGGGGGAGGAGGCTCTGAAAAGTGGCGAAGAGGGTCTGGTACCCGACGGTGACACGGGCAAGAA
GACATACAAGTGCGAGCAGTGTGGCAAGGGCTTCAGTTGGCACTCGCACCTGGTGACACACCGGCGTACG
CACACGGGCGAGAAGCCTTATACCTGCACGGACTGTGGCAAGCGCTTCGGCCGCAGCTCACACCTCATCC
AGCACCAGATCATCCACACGGGCGAGAAGCCCTATACCTGCCCCTCGTGTTGGAAGAGCTTCAGCCACCA
CTCCACGCTGATCCAGCACCAGCGCATCCACACTGGTGAGAAGCCCTACGTGTGCGACCGCTGTGCCAAG
CGCTTCACCCGTCGCTCGGACCTAGTCACACACCAGGGCACTCACACCGGCGCCAAGCCCCACAAGTGCC
CCATCTGCAGCAAGTGCTTCACCCAGAGCTCCGCCCTGGTCACGCACCAGCGCACCCACACCGGCGTCAA
GCCCTACCCGTGCCCGGAGTGCGGCAAGTGCTTCAGCCAGCGCTCCAATCTCATCGCACATAATCGCACC
CACACGGGCGAGAAGCCCTACCACTGCCTCGACTGTGGCAAGAGCTTCAGCCACAGCTCGCACCTCACTG
CCCACCAACGCACTCACCGTGGCGTGAGGCCCTACTCCTGCCCACTTTGCGGCAAGAGCTTCAGCCGCCG
CTCCAACCTGCACCGGCACGAGAAGATCCACACCACTGGACCCAAGGCTCTGGCCATGCTCATGCTGGGG
GCGGCAGCTGCGGGGGCGCTCACGGCACCACCACCTGCTTCCACTTAG

Translation (505 aa):
MSADSQSIAATENEEKSHEVPGNVQHCGDMLSGQEETVPLGTSQESTHIKAEPEEPHSEGASREDRTPGT
QRWMSPCPGPKDKVVPSPWTPVLSRGGRTRERKMAAALLTAWSQMPVTFEDVALYLSQEEWGRLDHTQQN
FYRDVLQGKNGLALGAVEMGKVVPALAVATLEDTKSIRTRARWAPGEDPKCGQHVASGPGTKLTRDTGKA
GQLKPAPSESRPLKTPEDSGPEKPSEGEEALKSGEEGLVPDGDTGKKTYKCEQCGKGFSWHSHLVTHRRT
HTGEKPYTCTDCGKRFGRSSHLIQHQIIHTGEKPYTCPSCWKSFSHHSTLIQHQRIHTGEKPYVCDRCAK
RFTRRSDLVTHQGTHTGAKPHKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAHNRT
HTGEKPYHCLDCGKSFSHSSHLTAHQRTHRGVRPYSCPLCGKSFSRRSNLHRHEKIHTTGPKALAMLMLG
AAAAGALTAPPPAST


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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