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Report for CCDS28434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28434.1 Public Mus musculus 17 Zfp160 23 108 98 CCDS HistoryNCBI Gene:224585Re-query CCDS DB by CCDS ID:28434.1Re-query CCDS DB by GeneID:224585See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088811.6 ENSMUSP00000086191.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088811.6Link to Ensembl Protein Viewer:ENSMUSP00000086191.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088811Re-query CCDS DB by Protein ID:ENSMUSP00000086191
Original member Current member NCBI NM_145483.2 NP_663458.2 Accepted alive Link to Nucleotide Sequence:NM_145483.2Link to Protein Sequence:NP_663458.2Re-query CCDS DB by Nucleotide ID:NM_145483Re-query CCDS DB by Protein ID:NP_663458Link to BLAST:NP_663458.2

Chromosomal Locations for CCDS 28434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 21011758 21011772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21020072 21020198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21020706 21020834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21025461 21027142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGGCTGTCACTCAGGGACAGTTGTCATTCAGTGATGTAGCCATAGAGTTCTCTCAAGAGGAATGGGAAT
GCCTAGACCATGCACAGAGAGCTTTGCACAGGGATGTCATGTTGGAGAATTACAGCAACCTGCTCTCCCT
GGGAGTCACACTTCCAAATTTGAATGCTATGTCTAAGTTGGAACAATACAAAGGGCCCTGGACTGTGGAG
AGTGAGGCAATAAGAACCAGAAAATCAAATGGAAAGGAATATATCAGAGCTATGAGTGCAGAAAATATTA
ATGGTAATGAAGCTAAGTCCATCAGCAGTGGTTCTTCAATTTTGTCATCTGACAAAATTCTTGCTAGTGG
TGACAAAGCACCTGTTGTTCATGAATATGATGTTTATTCTTCACTACGTATAAAAGGACAGAAAGCCACC
ATTAAGGGGAAACCTTATCAATGTAAAGAGTGTGACAAAGTCTTCAGTTATACTTCTTCTTTAGCATATC
ATCGGCAGATTCATACTGGAGAAAAACTTTACAAGTGTCTTGAGTGTGGTAAGGCTTTTTTTCGACGTTC
TTATCTTTTGGTACATGAGAGGCATCATACTGGAGCGAAACCTTACAAATGTAATGAATGTGGCAAGGTG
TTCAGTCAGAATTCACACCTTAAGAGTCATCGAAGAATCCATACTGGTGAGAAACCATTCAAGTGCAATC
ATTGTGGCAAAGCCTTTAGTGTTCGTTCAAACCTAACTCACCATCAGGTAATCCATACTGGAGATAAACC
TTATAAATGTAATGAGTGTGGCAAGGTCTTCAGTCAAACCTCAAGCCTCACAATTCATCGTAGAACTCAC
ACTGGAGAGAAACCTTACAGGTGCAATGAGTGTGGGAAAGTATTCAGTTCACATTCAAACCTAAATACCC
ATCAGGCAATCCATACTGGAGAAAAACCCTACAAATGTTCAGAGTGTGGCAAGGTCTTTACTCAGAATTC
ACACCTTGCAAATCATTGGAGAATACATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCC
TTTAGTGTATACTCTAGCCTCACTACCCATCAGGCAATCCATACAGGAGAAAAACCTTACAAGTGTAATG
AATGTGGCAAGGTCTTCACTCAAAATTCACACCTAGCTAGTCACCGTGGAGTTCACAGTGGGGAAAAGCC
TTACAAGTGTGAAGAATGTGGCAAACTCTTCAGCCAAACTTCAAATCTTGCAAGACATTGGAGAGTTCAC
ACTGGAGAGAAGCCTTACAAATGCAGTGAATGTGGCAAAGCTTTTAGTGTGCGTTCTAGCCTGATTGCCC
ATCAAGTAATCCATACTGGAGAAAAGCCTTATAAATGTACTGAATGTGGCAAGGTCTTCAGTCAGACTTC
AAGCCTTTCAATCCATCAAAGAATTCACACTGGAGAGAAACCTTACAGATGCAATGAGTGTGGAAAAGCC
TTTAATTCACATTCCAACCTAAATACCCATCAAGTAATCCATACTGGACAAAAACCCTATAAATGTATGC
AATGTGGCAAGGTCTTTACTCAAAATTCACATCTTGCAAATCATCAAAGAACCCATACAGGAGAGAAACC
TTACAAATGTAATGAGTGTGGCAAAGCCTTCAGTGTGTACTCAAGTTTGACTACTCATCAGGCAATCCAT
ACTGGAGAAAAACCTTATAAGTGTAATGAATGTGGTAAAGTCTTCACGCAAAATTCACACCTAGCTAGTC
ACCGGAGGACTCATACTGGAGAAAAACCTTACCAGTGTAATAAGTGTGATAAAGCCTTTAGTGTGCGTTC
AAGCTTGACTACCCATCAGGCAATCCATACTGGAGAAAAACCTTACACATGTAGTGAGTGTGGCAAAGTC
TTTAGTCGAAGTTCCAACCTTACAAGTCATCAGAGACTTCATGTTGGACAGAAGCATATGTGA

Translation (650 aa):
MAVTQGQLSFSDVAIEFSQEEWECLDHAQRALHRDVMLENYSNLLSLGVTLPNLNAMSKLEQYKGPWTVE
SEAIRTRKSNGKEYIRAMSAENINGNEAKSISSGSSILSSDKILASGDKAPVVHEYDVYSSLRIKGQKAT
IKGKPYQCKECDKVFSYTSSLAYHRQIHTGEKLYKCLECGKAFFRRSYLLVHERHHTGAKPYKCNECGKV
FSQNSHLKSHRRIHTGEKPFKCNHCGKAFSVRSNLTHHQVIHTGDKPYKCNECGKVFSQTSSLTIHRRTH
TGEKPYRCNECGKVFSSHSNLNTHQAIHTGEKPYKCSECGKVFTQNSHLANHWRIHTGEKPYKCNECGKA
FSVYSSLTTHQAIHTGEKPYKCNECGKVFTQNSHLASHRGVHSGEKPYKCEECGKLFSQTSNLARHWRVH
TGEKPYKCSECGKAFSVRSSLIAHQVIHTGEKPYKCTECGKVFSQTSSLSIHQRIHTGEKPYRCNECGKA
FNSHSNLNTHQVIHTGQKPYKCMQCGKVFTQNSHLANHQRTHTGEKPYKCNECGKAFSVYSSLTTHQAIH
TGEKPYKCNECGKVFTQNSHLASHRRTHTGEKPYQCNKCDKAFSVRSSLTTHQAIHTGEKPYTCSECGKV
FSRSSNLTSHQRLHVGQKHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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