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Report for CCDS28431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28431.1 Public Mus musculus 17 Vmn1r232 23 108 98 CCDS HistoryNCBI Gene:171227Re-query CCDS DB by CCDS ID:28431.1Re-query CCDS DB by GeneID:171227See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077001.2 ENSMUSP00000076261.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077001.2Link to Ensembl Protein Viewer:ENSMUSP00000076261.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077001Re-query CCDS DB by Protein ID:ENSMUSP00000076261
Original member Current member EBI ENSMUST00000237554.1 ENSMUSP00000157752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237554.1Link to Ensembl Protein Viewer:ENSMUSP00000157752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237554Re-query CCDS DB by Protein ID:ENSMUSP00000157752
Original member Current member EBI ENSMUST00000237560.1 ENSMUSP00000157872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237560.1Link to Ensembl Protein Viewer:ENSMUSP00000157872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237560Re-query CCDS DB by Protein ID:ENSMUSP00000157872
Original member Current member NCBI NM_134193.2 NP_598954.2 Accepted alive Link to Nucleotide Sequence:NM_134193.2Link to Protein Sequence:NP_598954.2Re-query CCDS DB by Nucleotide ID:NM_134193Re-query CCDS DB by Protein ID:NP_598954Link to BLAST:NP_598954.2

Chromosomal Locations for CCDS 28431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20913281 20914336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCTGTGTGACTTGGAAATAGGTAGTACTGTGATTCTTGCACATACATGTCCCAACTTAGAAAACTTAC
TTCAATACATAGTTCACAAATGTGATTATTACCATAATTTAAAGGAAAAAACGTTGAATGACCTAATGGA
GTCCAGGAACATGGCAATAGGAGTAGGACTCTCACTTCAGAGTATACTTGGTATTCTGGGAAATTTCTCT
CTTCTTTTCTACTACCTAATCCTATACTACAAAGAACACACATTAAAGATCAGAGACATGATTCTAGTAC
ATGTGCTCACATCTAACTCCTTGATCATTATCTCCAAAGGTTTCCCCCAGATAATGGGAGCTTTTGGGTG
GAACCAGTTATTCAATGATGTTGGGTGCAAACTTATTTTATATGTTCAAAGACTTAGCAGGAACATGTCC
ATTATCACCACTTGTCTCTTGAGTGTCTTCCAGGCAATCACCATCAGCCCCAGGAATTCCCATTGGAAGA
AATTTAAAGTCAAATCAACAAAGTTTATGGGCTTGCCCATTTCTCTCTTCTGGATCTTGTTTATGTTAGT
AAATATGCTTTTCCCTGTGTATACATCTACCAAGACGAATAGCAAAAACAAGACACAAAAGAGAGATTCT
GAATTCTGCCATTCTCTAGGCCGTGACAAAATAGTTGATATACTATATACGGCACTTTGTGTGTTTCCTG
AAGTTGTATTTTCTCTGCTCATTGTATGTTCTAGCACCTTCATGATTGCAATACTTCATGTACACAAAAA
GAGGGTTCAACACATCCTCTGTACTCATACTTATCCAAGAAGATCCCCTGAAAACAGAGCCACACAGACC
ATCTTGATTCTTGTTTGCACCTTTCTAGCATTTTATACACTCTCTTCAGTTTTGCAAGGCTATATTGCTC
TTTCACATGATCCCAGTTGGTGGGTAATGAATACCACAGCCATCATTTCTATGGGTTTTCCTACTTTAGG
GCCATTTGTGATGAGTCGTGATTTCACTGTTTCCAGATTCTGCTTTACCTGTATAAGAAATATAGAGAAA
ACGTGA

Translation (351 aa):
MLCDLEIGSTVILAHTCPNLENLLQYIVHKCDYYHNLKEKTLNDLMESRNMAIGVGLSLQSILGILGNFS
LLFYYLILYYKEHTLKIRDMILVHVLTSNSLIIISKGFPQIMGAFGWNQLFNDVGCKLILYVQRLSRNMS
IITTCLLSVFQAITISPRNSHWKKFKVKSTKFMGLPISLFWILFMLVNMLFPVYTSTKTNSKNKTQKRDS
EFCHSLGRDKIVDILYTALCVFPEVVFSLLIVCSSTFMIAILHVHKKRVQHILCTHTYPRRSPENRATQT
ILILVCTFLAFYTLSSVLQGYIALSHDPSWWVMNTTAIISMGFPTLGPFVMSRDFTVSRFCFTCIRNIEK
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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