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Report for CCDS28377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28377.1 Public Mus musculus 17 Tcp10a 23 108 98 CCDS HistoryNCBI Gene:21461Re-query CCDS DB by CCDS ID:28377.1Re-query CCDS DB by GeneID:21461See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095726.10 ENSMUSP00000093394.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095726.10Link to Ensembl Protein Viewer:ENSMUSP00000093394.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095726Re-query CCDS DB by Protein ID:ENSMUSP00000093394
Original member Current member EBI ENSMUST00000128533.7 ENSMUSP00000114351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128533.7Link to Ensembl Protein Viewer:ENSMUSP00000114351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128533Re-query CCDS DB by Protein ID:ENSMUSP00000114351
Original member Current member EBI ENSMUST00000129709.7 ENSMUSP00000114830.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129709.7Link to Ensembl Protein Viewer:ENSMUSP00000114830.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129709Re-query CCDS DB by Protein ID:ENSMUSP00000114830
Original member Current member NCBI NM_011553.4 NP_035683.2 Accepted alive Link to Nucleotide Sequence:NM_011553.4Link to Protein Sequence:NP_035683.2Re-query CCDS DB by Nucleotide ID:NM_011553Re-query CCDS DB by Protein ID:NP_035683Link to BLAST:NP_035683.2

Chromosomal Locations for CCDS 28377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7325880 7325984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7326383 7326598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7329767 7329925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7331151 7331250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7333179 7333282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7334287 7334385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7336897 7337037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7339031 7339115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7343449 7343566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7344938 7345127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGTTGGAGGATCTGAGTCAAGGAAAAGGGTCCAACCATGAGAAGAGGAAGATGGAGAGCACAGCCCAGA
TCACTGAGGAAGACAGCAAGCTTGATGAGGTTGTGGGGCTGCAGAAGCAGATCTGTGACCTTGGGACAGA
GCTCACAAGACAATCATCTTGGTGGTGCATAGCTCACAAAGACCTCCAAAGCCAGATCGATGCTCTGATA
AAGGAGAACCAGGAGATCCGTGCGGAGCTGAAGACCTTGAAGAAGCAGGATGCGGAGGCCACCAAAGCCT
GTATAGGCTCGCCCACCCCGGCAAGAGCAAGCAACACTCTGCCAGTGTACATAAAGATAGAGGGAACTGA
TTCCGAGAGGACAACCTCATGGGATGAAAGAGATGAGCTTTCTGGAAGTCCTCCAAACAGAAGCACAATG
GCCACCGGAGGAACAGACTCCCAGGATGAAATGCTGTCTTTTACATCTGTGGATGAAAAGGTTATACACA
TGTCTTCCAAATTTCTGCAAAGAAGCTTGGGCAGAATGTCACCAGAACCACTGTCTGACAGCACATTCCT
GGACACAGAGTCACTGGCTGACATCTGGTCCTCAAATCCAGAGACTTCGGACGGTGAACTTCTCCTGCAT
GCTCAAGCAAGCAGGGTCATCCCTTGTTTTTCCCCAAATGCACTGTGGGTGCAGAATATTCCAACAAAGT
CAAGAGCTCCTAAAGAAATACAGCAAACCTCGGACACTACAAAGACTGATGAGACAAAGGAAAAGCAACA
CCCAAATGGCAAGGTGGAGCGGATGCTCAGCGACGGGCGAACCATCATCACCTTCCCCAATGGAACCAGG
AAGGAGATCAGTGCTGACAAGAAGACCACCCTCATCAGGTTTTTTAACGGTGACATGAAGAAGATCAAGT
CCAATCAGAAAGTGATTTATTATTATGCGGATGCACAAACAATGCACACAACCTACCCAGATGGTGTTGA
AGTGGTGCAGTTTCCTAACAAGTGGACTGAAAAATTCTACCCGGATGGCTCCAAGGAAACCGTGTTTCCT
GATGGGACAGTGAAACGGCTTAAGGATGGATGTGAAGAGACGGTGTTCCCTGATGGGACATTTGTGACAG
TGAAGAGGAACGGAGACAAAACCATCATGTTCAGCAACGGAGAGAAAGAAATCCACACGGCCAGGTTCAA
GCGGAAGGAATTCCCAGATGGCACCACCAAGACTGTGTATTGCAATGGCTGCCAGGAGACTAAGTATGCC
TCAGGGAGGGTCAGGGTCAAAGATGAGAAGGGAACTGTCATCCTGGACTGGAAGTAG

Translation (438 aa):
MLEDLSQGKGSNHEKRKMESTAQITEEDSKLDEVVGLQKQICDLGTELTRQSSWWCIAHKDLQSQIDALI
KENQEIRAELKTLKKQDAEATKACIGSPTPARASNTLPVYIKIEGTDSERTTSWDERDELSGSPPNRSTM
ATGGTDSQDEMLSFTSVDEKVIHMSSKFLQRSLGRMSPEPLSDSTFLDTESLADIWSSNPETSDGELLLH
AQASRVIPCFSPNALWVQNIPTKSRAPKEIQQTSDTTKTDETKEKQHPNGKVERMLSDGRTIITFPNGTR
KEISADKKTTLIRFFNGDMKKIKSNQKVIYYYADAQTMHTTYPDGVEVVQFPNKWTEKFYPDGSKETVFP
DGTVKRLKDGCEETVFPDGTFVTVKRNGDKTIMFSNGEKEIHTARFKRKEFPDGTTKTVYCNGCQETKYA
SGRVRVKDEKGTVILDWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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