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Report for CCDS28373.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28373.2 Public Mus musculus 17 Sytl3 23 108 98 CCDS HistoryNCBI Gene:83672Re-query CCDS DB by CCDS ID:28373.2Re-query CCDS DB by GeneID:83672See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28373.1
The coding region has been updated to start at an alternate in-frame start codon that is better supported by conservation data. This CCDS is based on the splice variant with an alternate splice form with a short 5' end (based on AB050743.1) as described in PMID:11327731 (Slp3-b).

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 28373.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160483.8 ENSMUSP00000123996.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160483.8Link to Ensembl Protein Viewer:ENSMUSP00000123996.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000160483Re-query CCDS DB by Protein ID:ENSMUSP00000123996
Original member Current member NCBI NM_183368.2 NP_899224.2 Accepted alive Link to Nucleotide Sequence:NM_183368.2Link to Protein Sequence:NP_899224.2Re-query CCDS DB by Nucleotide ID:NM_183368Re-query CCDS DB by Protein ID:NP_899224Link to BLAST:NP_899224.2

Chromosomal Locations for CCDS 28373.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6705917 6706018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6709097 6709231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6715384 6715562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6728239 6728341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6732952 6733122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6734466 6734571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6735378 6735474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6736411 6736616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6737727 6737836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGACCTCTGAGAAGCATCTTCTGGCCATGGACCCCAGGCAGTGTGTGGGACACACGGAGAGGCGGAGCC
AGTCAGACACTGCAGTCAACGTGACTTCCAGGAAGGCCAGCACACCCGATATTCTGAAAGCATTCCATCA
AGAAGATCCCAAACACCCTCCCGACCCTGTTTTGAAGCAAGACACTCCCCCGTCCAGTCCGACACACAGC
GCTGTCTTCTCTGGAGGCTTGAGACACGGAAGCTTAATTAGCATCAACAGCACCTGCACAGAGATGGGTA
ATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGCCATTCATTACTGCGTTAAAAGCTGCTCTTT
AGAGATATGCATCAAGACCTGTAAGAACCTTGCCTATGGAGAAGAAAAGAAAAGAAAGTGCAATCCGTAT
GTCAAGACCTACCTGCTGCCTGACAGGTCTTCTCAGGGAAAACGCAAGACACGAGTCCAAAAGAACACGC
TGGACCCGACTTTCGAGGAAACCTTGAAGTATCAGGTGGACCCTGGCCAGCTGATGACCCGGAGGCTGCA
GGTCTCTGTGTGGCACCTAGGCACCCTTGCCCGGAGGGTGTTCCTCGGAGAAGTGATCCTTCCACTGGCC
ATGTGGGACTTTAAGGACAGTACGGCACAGAATGCCAGATGGTATCCTCTGCGGGCCAAGGCTGAGAAAT
ACGAAGAGAATATTCCTCAGAATAATGGAGAACTTGCTGTTCGAGCCAAATTGGTCCTTCCCGCAGGGCC
AAGAAAGCCCCAGGAGGCCCAAGAAGGTCAGCTAGCGCTTAATGGTCAACTGTGTCTGGTTGTGTTGGGA
GCCAAGAATTTACCGGTGAGGTCAGATGGCACCTTAAACTCATTTGTTAAGGGCTGTCTCACCCTGCCAA
ACCAACAAAAGCTGCGTGTGAAGTCCCCAGTCCTGAAGAAGCAGGCTTGTCCCCAGTGGAAACACTCCTT
TGTGTTTAATGGTGTGAGCAGTTCTCAGCTGAGACAGTCCACCTTGGAGCTGACTGTCTGGGACCAGGCC
ATCTTTGGTATGAACGACCGTCTGCTCGGGGAAGCCAGGCTTGGTTCAAAGGGAGGTGCTGCGGGTTGTC
CCGACTCAGGTTCACAGTCCAAGCTTCAGTGGCACAGAGTCCTCTCCAGCCCAAACCTGTGGACAGACAT
GACCCTCGTCCTGCACTGA

Translation (402 aa):
MTSEKHLLAMDPRQCVGHTERRSQSDTAVNVTSRKASTPDILKAFHQEDPKHPPDPVLKQDTPPSSPTHS
AVFSGGLRHGSLISINSTCTEMGNFDNANVTGEIEFAIHYCVKSCSLEICIKTCKNLAYGEEKKRKCNPY
VKTYLLPDRSSQGKRKTRVQKNTLDPTFEETLKYQVDPGQLMTRRLQVSVWHLGTLARRVFLGEVILPLA
MWDFKDSTAQNARWYPLRAKAEKYEENIPQNNGELAVRAKLVLPAGPRKPQEAQEGQLALNGQLCLVVLG
AKNLPVRSDGTLNSFVKGCLTLPNQQKLRVKSPVLKKQACPQWKHSFVFNGVSSSQLRQSTLELTVWDQA
IFGMNDRLLGEARLGSKGGAAGCPDSGSQSKLQWHRVLSSPNLWTDMTLVLH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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