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Report for CCDS28358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28358.1 Public Mus musculus 16 Itgb2l 23 108 98 CCDS HistoryNCBI Gene:16415Re-query CCDS DB by CCDS ID:28358.1Re-query CCDS DB by GeneID:16415See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000161.13 ENSMUSP00000000161.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000161.13Link to Ensembl Protein Viewer:ENSMUSP00000000161.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000161Re-query CCDS DB by Protein ID:ENSMUSP00000000161
Original member Current member NCBI NM_008405.3 NP_032431.2 Accepted alive Link to Nucleotide Sequence:NM_008405.3Link to Protein Sequence:NP_032431.2Re-query CCDS DB by Nucleotide ID:NM_008405Re-query CCDS DB by Protein ID:NP_032431Link to BLAST:NP_032431.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032431.2 738 Q3UV74-1 738 100% 0 0

Chromosomal Locations for CCDS 28358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 96422621 96422688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96422957 96423118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96424903 96425096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96426049 96426268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96426729 96426973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96427674 96427861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96428969 96429109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96430566 96430655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96432580 96432675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96433477 96433632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96434585 96434742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96435620 96435790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96437270 96437450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96438464 96438552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96438740 96438797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGCTGGGCCAGTGCACTCTGCTACCTGTCCTAGCTGGGCTGCTGTCTCTGGAATCTGCACTGTCTCAGT
TGTGTACCAAGGACAATGTGAGCACCTGTCAGGACTGTATCCGGTCAGGGCCCAGCTGTGCCTGGTGCCA
GAAGCTGAACTTCACAGGGCGAGGGGAGCCCGACTCAGTTCGCTGTGATACACCAGAGCAACTGTTGCTA
AAAGGCTGCACATCTGAGTACCTCGTGGACCCCAAGAGTCTTGCTGAATCCCAGGAAGACAAGGAGAGGG
ACCAGAGGCAGCTGTCTCCACGAAATGTGACAGTTTTCTTAAGACCGGGTCAAGCGGCAACATTCAAAGT
GGACTTCCAGCGGACCCAGGACAACTCTGTTGACCTGTACTTCCTGATGGGCCTCTCTGGCTCTGCGCAA
GGCCACCTCTCCAATGTCCAGACACTGGGCAGTGACCTGCTCAAAGCCCTCAATGAGATCTCCAGGTCAG
GCCGAATCGGCTTTGGATCCATTGTGAACATGACCTTCCAGCACATCCTGAAGCTGACTGCGGACTCCAG
CCAATTTCAGAGGGAGCTGAGGAAGCAACTGGTTTCTGGAAAGCTGGCTACCCCCAAGGGACAGCTGGAT
GCTGTGGTTCAAGTTGCCATATGCCTGGGAGAAATCGGCTGGCGCAATGGGACCCGATTTCTGGTGCTTG
TTACTGACAACGATTTCCACTTGGCTAAAGACAAGACTCTGGGTACCAGACAGAACACCAGCGATGGTCG
CTGTCACCTGGACGACGGCATGTACAGGAGCAGGGGAGAACCTGACTACCAGTCAGTGGTCCAGCTGGCA
AGCAAACTGGCTGAAAACAACATCCAGCCCATCTTCGTGGTGCCCTCAAGGATGGTGAAAACCTATGAGA
AACTTACCACATTCATCCCCAAGCTGACCATTGGGGAGCTGTCAGATGACTCCAGCAACGTGGCACAGCT
CATCAGGAACGCCTACAGTAAACTCTCCTCCATTGTTGTGCTGAACCACAGCACCATCCCCAGCATCCTG
AAAGTTACCTACGACTCCTACTGCAGCAATGGAACATCAAATCCAGGCAAACCCAGCGGGGACTGCAGTG
GTGTACAGATCAATGACCAGGTCACCTTCCAGGTTAACATCACAGCTTCAGAGTGCTTCCGGGAGCAGTT
CTTTTTCATCCAGGCACTGGGCTTCATGGATTCAGTGACCGTGCGGGTCCTTCCCCTGTGTGAGTGCCAG
TGCCAGGAGCAGAGTCAACACCACAGCCTCTGTGGAGGCAAGGGAGCCATGGAGTGTGGCATCTGCAGGT
GCAACTCTGGCTACGCTGGGAAAAACTGTGAGTGCCAGACACAGGGCCCGAGCAGCCAGGATCTGGAGGG
AAGCTGCCGGAAGGACAATAGTTCCATCATGTGCTCGGGGCTGGGAGACTGTATCTGTGGGCAGTGTGAG
TGCCACACCAGTGACATCCCCAACAAAGAGATCTATGGGCAATACTGCGAGTGCAACAATGTCAACTGTG
AGAGATATGATGGCCAAGTCTGCGGTGGCCCAGAAAGAGGCCACTGCTCCTGTGGCCGATGCTTTTGTCG
TTACGGCTTCGTGGGCTCAGCCTGCCAGTGCCGGATGTCCACTTCAGGCTGTCTGAACAACAGGATGGTG
GAGTGCAGTGGCCATGGTCGATGCTACTGTAACAGATGCCTCTGTGACCCGGGCTACCAGCCACCACTGT
GTGAGAAGCGTCCTGGCTATTTCCATCGCTGCTCCGAGTACTACTCCTGTGCCAGGTGCTTGAAAGACAA
CAGTGCAATAAAATGCAGAGAGTGTTGGAATCTGCTGTTTTCCAACACCCCCTTCAGTAACAAGACCTGC
ATGACTGAACGGGACTCAGAGGGCTGTTGGACAACCTACACTCTATATCAGCCAGACCAGAGTGACATCA
ATTCCATCTACATAAAGGAGAGCCTAGTGTGTGCAGAAATCTCCAATACCACCATCCTACTGGGCGTTAT
AGTGGGCGTCTTGCTGGCTGTTATCTTCCTGCTGGTTTACTGTATGGTTTACCTGAAGGGAACCCAGAAG
GCTGCCAAGCTCCCCAGAAAGGGTGGGGCTCAAAGCACACTGGCACAGCAGCCTCATTTCCAAGAACCCC
ACCATGTGGAGCCAGTGTGGAATCAAGAGAGACAGGGTACCCAATGA

Translation (738 aa):
MLGQCTLLPVLAGLLSLESALSQLCTKDNVSTCQDCIRSGPSCAWCQKLNFTGRGEPDSVRCDTPEQLLL
KGCTSEYLVDPKSLAESQEDKERDQRQLSPRNVTVFLRPGQAATFKVDFQRTQDNSVDLYFLMGLSGSAQ
GHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLD
AVVQVAICLGEIGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLA
SKLAENNIQPIFVVPSRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIRNAYSKLSSIVVLNHSTIPSIL
KVTYDSYCSNGTSNPGKPSGDCSGVQINDQVTFQVNITASECFREQFFFIQALGFMDSVTVRVLPLCECQ
CQEQSQHHSLCGGKGAMECGICRCNSGYAGKNCECQTQGPSSQDLEGSCRKDNSSIMCSGLGDCICGQCE
CHTSDIPNKEIYGQYCECNNVNCERYDGQVCGGPERGHCSCGRCFCRYGFVGSACQCRMSTSGCLNNRMV
ECSGHGRCYCNRCLCDPGYQPPLCEKRPGYFHRCSEYYSCARCLKDNSAIKCRECWNLLFSNTPFSNKTC
MTERDSEGCWTTYTLYQPDQSDINSIYIKESLVCAEISNTTILLGVIVGVLLAVIFLLVYCMVYLKGTQK
AAKLPRKGGAQSTLAQQPHFQEPHHVEPVWNQERQGTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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