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Report for CCDS28338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28338.1 Public Mus musculus 16 Clic6 23 108 98 CCDS HistoryNCBI Gene:209195Re-query CCDS DB by CCDS ID:28338.1Re-query CCDS DB by GeneID:209195See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023670.3 ENSMUSP00000023670.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023670.3Link to Ensembl Protein Viewer:ENSMUSP00000023670.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023670Re-query CCDS DB by Protein ID:ENSMUSP00000023670
Original member Current member NCBI NM_172469.3 NP_766057.1 Accepted alive Link to Nucleotide Sequence:NM_172469.3Link to Protein Sequence:NP_766057.1Re-query CCDS DB by Nucleotide ID:NM_172469Re-query CCDS DB by Protein ID:NP_766057Link to BLAST:NP_766057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766057.1 596 Q8BHB9 596 100% 0 0

Chromosomal Locations for CCDS 28338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92498454 92499557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92528060 92528169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92528696 92528821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92529869 92529975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92530756 92530937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92539435 92539596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGCTGAGGCCACGGAGCCCAAGGAGGTCGCTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGACAATCG
AG
GGACCAGGAGAGCCAGGAGCTGCGGACCTGGAGGGGCGGGAAGCGAGCGAGGAAGCTGCAGAGGCACC
T
AGGGACCTGGGGGCGGGCGTAGAGGCCAGGGCCTCGGGGAAGGAGGAAGGAGGCTGTGGGCAGGACGAG
GGA
ACTGGGGGAGCGCAGGCGCAGGACCCGCGCACCGGCCCTGAGGCCGAGACGCCGGGCGCCAGCGGAG
CT
CCAGGTGAAGCGGAGGCTGCGGAGCGCGACCCCGAGGGCGCGATCCCGCAGGGAGCGGAGGAGGCGCC
A
AGCGCCCAGCAGGTGCAGGGGATGAGCTCTGGGTTAGACTCTCAGGGTGAGGCCCCCGAGGTCCCTGGG
GAC
TCTCGCCGGGAGCCCGAGGACCCCACGGCCTCAGAGGCAGGGGAAGAGGCAGAATCTGGTCAGGAAG
CG
CAGGGAGGCGGCGCGCTAGGGTTGCAGATCAACCCAGAAGTCCAGGGACTTGCAGGGGACAACATGGA
C
ACAGAGGCACCCGCAGGAGGGCCACTTGGGTCGGAGAGTGAGCCCCAGGGTGGAGGGGAAAGCAGCCCT
CAG
CCCCAGGATGAGGCGATTGAGATTGTAACCACAGAGATCGGAGGGAACGAGTCCGGGGAGCTGGCGG
GC
GCTTCGGCCGCAGACGCCGCGGGGGAAGGGGAGACCCTGGGGAAAGACGGGTCCGAGGAAGCAGCTTC
C
GAGGATGCGAGAGTAGATGCTCATGAGAATGGGGACCAGGGCAAGCTCCAGGAGGAGACCGGGGAGGAA
GAA
GCGAGGCCAGAACCCGAGTTGAAGGGACCCTGCGAGGGGGCCATCCAAGAGAAGCCCCCCGACGGCA
GC
CTTGATGGAGAGGAGGCCAAATCCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTT
A
GCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGTTGGGGCGAGTGAACGGCCGCAGGGAGAATGGCCCA
GCA
TTGGAGGAGGGGGATCCGGGACAGGAGCACGACATCACCCTCTTCGTCAAGGCTGGTTATGACGGCG
AG
AGCATCGGAAACTGCCCATTTTCACAGCGTCTCTTTATGATCCTCTGGCTAAAGGGTGTTATATTCAA
T
GTGACAACGGTGGACCTAAAACGGAAGCCTGCAGACCTTCAGAACCTGGCTCCTGGGACGAACCCTCCT
TTC
ATGACTTTTGATGGTGAAGTCAAGACAGATGTGAATAAAATTGAGGAGTTCTTAGAGGAGAAGTTAG
TT
CCCCCGAGGTACCCTAAGCTGGGAACTCAGCACCCTGAGTCCAACTCAGCGGGAAATGATGTTTTTGC
C
AAATTCTCAGCATTTATTAAAAACACCAAGAAGGATGCAAATGAGATTTATGAAAAGAACCTACTACGG
GCC
CTGAAGAAGCTGGACAGTTACTTAAACAGCCCGCTGCCAGACGAAATCGATGCCGACAGTTCAGAGG
AT
GTCACTGTTTCACAAAGGAAGTTTCTGGATGGGGATGAGCTCACACTGGCTGACTGTAACCTCTTACC
C
AAGCTCCATATCATTAAGATTGTCGCCAAGAAATATAGAGATTTTGAGTTTCCTTCTGAAATGACCGGC
ATT
TGGAGGTACTTGAACAACGCTTACGCCCGGGATGAGTTCACTAACACGTGTCCGGCCGACCGGGAGA
TT
GAACACGCATATTCCGATGCAGCGAAAAGGATGAAGTGA


Translation (596 aa):
MAEATEPKEVAPGSQGQPEGATIEGPGEPGAADLEGREASEEAAEAPRDLGAGVEARASGKEEGGCGQDE
G
TGGAQAQDPRTGPEAETPGASGAPGEAEAAERDPEGAIPQGAEEAPSAQQVQGMSSGLDSQGEAPEVPG
D
SRREPEDPTASEAGEEAESGQEAQGGGALGLQINPEVQGLAGDNMDTEAPAGGPLGSESEPQGGGESSP
Q
PQDEAIEIVTTEIGGNESGELAGASAADAAGEGETLGKDGSEEAASEDARVDAHENGDQGKLQEETGEE
E
ARPEPELKGPCEGAIQEKPPDGSLDGEEAKSTEHEEESQAELSNHLAEEPSVQGGEELGRVNGRRENGP
A
LEEGDPGQEHDITLFVK
AGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPP
F
MTFDGEVKTDVNKIEEFLEEKLVPP
RYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLR
A
LKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIK
IVAKKYRDFEFPSEMTG
I
WRYLNNAYARDEFTNTCPADREIEHAYSDAAKRMK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser