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Report for CCDS28315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28315.1 Public Mus musculus 16 Hunk 23 108 98 CCDS HistoryNCBI Gene:26559Re-query CCDS DB by CCDS ID:28315.1Re-query CCDS DB by GeneID:26559See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065856.7 ENSMUSP00000068007.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065856.7Link to Ensembl Protein Viewer:ENSMUSP00000068007.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065856Re-query CCDS DB by Protein ID:ENSMUSP00000068007
Original member Current member NCBI NM_015755.2 NP_056570.1 Accepted alive Link to Nucleotide Sequence:NM_015755.2Link to Protein Sequence:NP_056570.1Re-query CCDS DB by Nucleotide ID:NM_015755Re-query CCDS DB by Protein ID:NP_056570Link to BLAST:NP_056570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056570.1 714 O88866 714 100% 0 0

Chromosomal Locations for CCDS 28315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90386456 90386716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90432514 90432806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90447310 90447365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90453680 90453815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90464141 90464268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90472444 90472579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90475820 90475982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90481250 90481333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90487859 90487906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90493413 90493593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90496090 90496748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGCCGGCAGCGGCGGGGGACGGGCTCTTGGGCGAGCCGGCGGCACCGGGGGGCGATGGAGGCGCGGAGG
ACACGACCAGGCCGGCGGCGGCCTGCGAGGGAAGTTTCCTGCCCGCCTGGGTGAGCGGCGTGTCCCGCGA
GCGGCTCCGGGACTTCCAGCACCACAAGCGCGTGGGCAACTACCTCATCGGCAGCAGGAAGCTGGGAGAG
GGCTCCTTCGCCAAGGTGCGCGAGGGGCTGCACGTGCTGACGGGAGAAAAGGTAGCTATCAAGGTCATCG
ATAAGAAAAGAGCCAAGAAAGACACCTACGTCACCAAAAACCTGCGTCGAGAGGGGCAGATCCAGCAGAT
GATCCGACACCCCAACATCACACAGCTCCTGGACATCTTGGAGACAGAGAACAGCTACTACCTGGTCATG
GAGCTGTGTCCTGGTGGCAACCTCATGCACAAGATCTACGAAAAGAAACGGTTGGATGAAGCCGAGGCCC
GCAGATACATCCGGCAACTCATCTCTGCGGTGGAACACCTGCACCGTGCGGGGGTGGTTCACAGAGACTT
GAAGATAGAGAATTTGCTACTAGATGAAGACAATAATATCAAGCTGATTGACTTTGGCTTGAGCAACTGT
GCAGGGATCCTAGGTTACTCGGATCCATTCAGCACACAGTGTGGCAGCCCTGCCTATGCTGCGCCAGAAC
TGCTTGCCAGGAAGAAATATGGCCCCAAAATTGATGTCTGGTCAATAGGCGTGAACATGTATGCCATGCT
GACGGGGACCCTACCTTTCACTGTGGAGCCTTTCAGCCTGAGGGCTCTGTATCAGAAGATGGTGGACAAA
GCAATGAATCCCCTGCCGACCCAGCTCTCCACAGGGGCCGTCAACTTTCTGCGCTCCCTCCTGGAACCAG
ACCCTGTGAAGAGGCCGAATATCCAGCAAGCGCTGGCGAATCGCTGGTTGAATGAGAATTACACTGGAAA
GGTGCCCTGCAATGTCACCTATCCCAACAGGATTTCTTTGGAAGACCTGAGTCCCAGCGTGGTGCTGCAC
ATGACTGAAAAGCTGGGCTATAAGAACAGTGACGTCATCAACACGGTGCTCTCCAACCGCGCCTGCCACA
TCCTGGCCATCTACTTCCTGTTGAACAAGAAACTTGAGCGCTATTTGTCAGGGAAATCAGATATCCAAGA
TAGCATCTGCTACAAGACCCAGCTCTACCAGATAGAGAAGTGCAGAGCCACCAAGGAGCCCTATGAGGCC
TCCCTGGATACCTGGACGAGGGACTTTGAATTCCATGCTGTGCAGGATAAAAAGCCCAAAGAACAAGAAA
AAAGAGGTGATTTTCTCCACCGTCCGTTTTCCAAGAAGTTGGACAAGAATCTGCCTTCTCACAAACAGCC
ATCGCCCTCGCTGATCACACAGCTCCAGAGTACCAAAGCCCTGCTCAAAGACAGGAAGGCCTCCAAGTCA
GGCTTCCCCGACAAAGATTCCTTCGTCTGCCGCAATCTTTTCCGAAAAACCTCTGATTCCAATTGTGTGG
CTTCTTCTTCCATGGAATTCATCCCTGTCCCACCTCCCAGGACACCAAGGATTGTAAAGAAACTAGAGCC
ACACCAACCAGGGCCGGGAAGTGCCAGCATCCTCCCCAAGGAAGAGCCCCTGCTGCTGGATATGGTACGC
TCCTTTGAGTCTGTGGATCGAGAGGACCACATAGAACTGCTGTCCCCTTCTCACCATTATAGGATCCTGA
GCTCGCCTGTGAGCCTGGCTCGTAGGAATTCTAGTGAGAGGACACTCTCCCAGGGGCTGCTGTCCGGAAG
TACCTCACCTCTCCAAACTCCACTGCATTCCACGCTGGTCTCTTTTGCCCACGAAGAAAAGAACAGCCCC
CCGAAAGAGGAGGGTGTGTGTTCACCGCCTCCCGTTCCCAGTAATGGCCTCCTGCAGCCTCTGGGGAGCC
CCAACTGTGTGAAGAGCAGGGGACGGTTCCCCATGATGGGCATCGGACAGATGCTGAGGAAGCGGCACCA
GAGCCTGCAGCCTTCCTCAGAGAGGTCCCTGGACGCCAGCATGTCCCCTCTGCAGCCCACAGCCCCCTCC
AGCCTCTCCTTTGACATGGCCGACGGTGTCAAGGGCCAGTGTTAA

Translation (714 aa):
MPAAAGDGLLGEPAAPGGDGGAEDTTRPAAACEGSFLPAWVSGVSRERLRDFQHHKRVGNYLIGSRKLGE
GSFAKVREGLHVLTGEKVAIKVIDKKRAKKDTYVTKNLRREGQIQQMIRHPNITQLLDILETENSYYLVM
ELCPGGNLMHKIYEKKRLDEAEARRYIRQLISAVEHLHRAGVVHRDLKIENLLLDEDNNIKLIDFGLSNC
AGILGYSDPFSTQCGSPAYAAPELLARKKYGPKIDVWSIGVNMYAMLTGTLPFTVEPFSLRALYQKMVDK
AMNPLPTQLSTGAVNFLRSLLEPDPVKRPNIQQALANRWLNENYTGKVPCNVTYPNRISLEDLSPSVVLH
MTEKLGYKNSDVINTVLSNRACHILAIYFLLNKKLERYLSGKSDIQDSICYKTQLYQIEKCRATKEPYEA
SLDTWTRDFEFHAVQDKKPKEQEKRGDFLHRPFSKKLDKNLPSHKQPSPSLITQLQSTKALLKDRKASKS
GFPDKDSFVCRNLFRKTSDSNCVASSSMEFIPVPPPRTPRIVKKLEPHQPGPGSASILPKEEPLLLDMVR
SFESVDREDHIELLSPSHHYRILSSPVSLARRNSSERTLSQGLLSGSTSPLQTPLHSTLVSFAHEEKNSP
PKEEGVCSPPPVPSNGLLQPLGSPNCVKSRGRFPMMGIGQMLRKRHQSLQPSSERSLDASMSPLQPTAPS
SLSFDMADGVKGQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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