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Report for CCDS28299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28299.1 Public Mus musculus 16 Krtap13-1 23 108 98 CCDS HistoryNCBI Gene:268905Re-query CCDS DB by CCDS ID:28299.1Re-query CCDS DB by GeneID:268905See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060494.7 ENSMUSP00000055537.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060494.7Link to Ensembl Protein Viewer:ENSMUSP00000055537.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060494Re-query CCDS DB by Protein ID:ENSMUSP00000055537
Original member Current member NCBI NM_183189.1 NP_899012.1 Accepted alive Link to Nucleotide Sequence:NM_183189.1Link to Protein Sequence:NP_899012.1Re-query CCDS DB by Nucleotide ID:NM_183189Re-query CCDS DB by Protein ID:NP_899012Link to BLAST:NP_899012.1

Chromosomal Locations for CCDS 28299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88728890 88729396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGTCCTACGGCTGCTATTCTGGAAACTTCTCTTCCCGCTCCAGTGGAGATCACCTGAGCTACCCTCACT
CCTCTTGTGGCTCTTCCTACCCCAGTCACCTACTCCAGAGCACTCGCTTCTACTCCCCAGGAACCTGCCA
TCTGGGCTCCTCTCTCCACAGTGGCTGTCAGCAGAACTGCTTCCAGCCCATCAGATGCCAGACTTCCCAT
GTGGTACACAGCTCCTGCCAGCGGCCCTGCTACAGCCCCAGAGTCTCCAGTGTCTGCAGTCCCTGCAGAA
CCACATATGCTGGCTCTCAGAGCTTTGGATCCAGCAGCTGCCACTCTCAGGGTTATGGGTCTAGAAGCTC
TTACTCTCTGAACTGTGGGTCCAGTGGCTTTAGACCACAAAGGGTCTCTTCTCTGGGCTATGGATCTGGA
TTCTGCCACCCATCCTATGTGCCCTATAGAACCTGTCAGTCTCCTTGCTACAGACCAAGCTGTGGCACTG
GATCTGGATTCTATTGA

Translation (168 aa):
MSYGCYSGNFSSRSSGDHLSYPHSSCGSSYPSHLLQSTRFYSPGTCHLGSSLHSGCQQNCFQPIRCQTSH
VVHSSCQRPCYSPRVSSVCSPCRTTYAGSQSFGSSSCHSQGYGSRSSYSLNCGSSGFRPQRVSSLGYGSG
FCHPSYVPYRTCQSPCYRPSCGTGSGFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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