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Report for CCDS28291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28291.1 Public Mus musculus 16 Usp16 23 108 98 CCDS HistoryNCBI Gene:74112Re-query CCDS DB by CCDS ID:28291.1Re-query CCDS DB by GeneID:74112See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026710.11 ENSMUSP00000026710.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026710.11Link to Ensembl Protein Viewer:ENSMUSP00000026710.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026710Re-query CCDS DB by Protein ID:ENSMUSP00000026710
Original member Current member NCBI NM_024258.2 NP_077220.2 Accepted alive Link to Nucleotide Sequence:NM_024258.2Link to Protein Sequence:NP_077220.2Re-query CCDS DB by Nucleotide ID:NM_024258Re-query CCDS DB by Protein ID:NP_077220Link to BLAST:NP_077220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077220.2 825 Q99LG0 825 100% 0 0

Chromosomal Locations for CCDS 28291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87458682 87458742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87461965 87462140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87464735 87464838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87466253 87466356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87469675 87469862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87470354 87470449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87471712 87471842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87472081 87472168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87473107 87473185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87474582 87474673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87475417 87475473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87476714 87476887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87479126 87479789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87480875 87480969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87481714 87481800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87482860 87483016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87483107 87483231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGGGGAAGAAACGGACCAAGGGGAGAAGTGCTCCAGACACGGTGGCCTCAGAGTCTGCAGAACCAGTGT
GCAGACACCTTAGAAAAGGGTTGGAACAAGGTAATTTGAAAAAAGCTTTAGTAAATGTGGAGTGGAATAT
CTGCCAAGACTGTAAGACTGACAATAAAGTGAAAGATAAACCTGAGGAGGAAGCAGAAGACCCTTCGGTT
TGGCTCTGTCTTAAATGTGGCCATCAGGGCTGTGGCAGAGATTCTCAGGAGCAGCATGCCTTGAAGCACT
ACACGACACCGAGATCCGAGCCTCACTACCTGGTGCTCAGTCTGGACAACTGGAGCGTCTGGTGCTACAA
GTGTGACGAGGAAGTCAAGTACTGTAGCTCAAACCGATTGGGCCAAGTGGTTGATTATGTTAGAAAACAA
GCTGGCGTAAGAACTTCAAAACCAGCAGAGAAAAATAATGGACACATTGAGCTCGAAAATAAAAAATTGG
AGAAAGAGAGTAAAAATGAACAAGAGAGAGAGAAATCGGAAAACCTGGCTAAAGAAACTATTCCCATGGA
CTCTGCTTCCCAGATAACTGTGAAAGGACTCAGTAATTTGGGGAATACTTGTTTCTTCAATGCAGTTATG
CAGAACTTGTCACAAACGCCAGTGCTTAGAGAACTACTAAAAGAAGTGAAGATGTCTGGAACGATTGTAA
AAATAGAGCCACCTGATCTGGCACTAACAGAACCTTTAGAAGTAAACCTCGAGCCTCCAGGTCCTCTTAC
TTTAGCCATGAGCCAGTTTCTCAGTGAGATGCAAGAGAACAAAAAGCGAGTTGTGACACCTAAAGAGCTC
TTTTCTCAGGTCTGTAAAAAAGCAACACGTTTTAAAGGGTACCAGCAACAAGACAGCCAGGAGCTGCTTC
GCTACCTACTGGATGGGATGAGAGCGGAAGAACACCAAAGAGTGAGTAAAGGAATTCTTAAAGCATTTGG
TAATTCTACTGAAAAATTGGATGAAGAAGTAAAAAATAAAGTTAAAGATTATGAAAAGAAAAAGGCAATC
CCGAGTTTTGTGGACCGCATCTTTGGTGGCGAGCTGACTAGTACGATCATGTGTGATGAATGCAGGACTG
TCTCCTTAGTGCATGAATCGTTCCTTGATTTGTCTCTTCCAGTTTTAGATGATCAGAGTGGTAAGAAAAG
TATAAATGATAAAAATGTGAAAATGACAATGGAGGAAGAAGATAAAGACAGTGAGGAAGAGAAAGATGAC
AGCTACATGAAATCAAGGAGCGATCTTCCGTCAGGGACAAGCAAGCACCTACAGAAAAAGGCAAAGAAGC
AGGCCAAAAAGCAGGCCAAGAACCAACGAAGGCAACAAAAAATTCAAGAAAGATTTCTTCACTTCAATGA
GCTCTGCGCCACTGACTACACGGAAGACAATGAACGTGAAGCTGACACAGCACTTGCGGGAGAAGTGGAA
GTGGATACCGACTCCACCCATGGTTCTCAAGAGGAGGCCACACAGATAGAGCTGTCTGTTAACCAGAAGG
ATTTGGATGGCCAAGAGAGCATGATAGAAAGGACACCTGATGTGCAGGAAAGCCCAGAGGACCTAGGAGT
GAAAAGTGCTAACACCGAGAGTGATCTGGGGATTGTGACGCCTGCTCCTGAATGTCCTAGGGATTTCAAT
GGTGCCTTCCTGGAAGAAAGGACCAGTGGAGAACTAGACATTATCAATGGTTTAAAAAACCTTAATTTGA
ATGCTGCTGTTGATCCTGATGAAATAAATATAGAGATTCCGAATGACAGTCATTCTGCACCCAAGGTATA
TGAGGTCATGAACGAGGACCCAGAAACTGCTTTCTGTACCCTCGCGAACCGAGAAGCGTTTAGTACTGAT
GAGTGTTCCATTCAACATTGCTTATATCAGTTCACCCGGAATGAGAAACTTCAAGATGCCAATAAACTGC
TTTGTGAAGTGTGTTCAAGACGGCAGTGTAATGGACCAAAGGCAAATATAAAAGGTGACAGGAGACATGT
TTACACCAATGCCAAGAAGCAGATGCTGGTCTCCCTCGCGCCTCCTGTCCTCACTCTGCATTTAAAGCGA
TTCCAGCAGGCTGGTTTTAACCTGCGCAAAGTTAACAAACACATAAAGTTTCCAGAAATCTTAGATTTGG
CTCCTTTTTGTACCCTTAAATGTAAGAATGTTGCTGAAGAAAGTACACGAGTGCTGTATTCCTTATATGG
AGTTGTTGAACACAGTGGTACTATGAGGTCAGGGCATTACACTGCCTATGCGAAGGAGAGAACTGCAAGC
TGTCACCTCTCCAATCTTGTTCTTCACGGTGACATTCCACAAGATTGTGAAATGGAATCAACCAAAGGGC
AGTGGTTTCACATCAGCGATACACATGTGCAAGCTGTGCCTATAACTAAAGTACTGAACTCACAAGCGTA
TCTCCTATTTTATGAGAGAATACTGTGA

Translation (825 aa):
MGKKRTKGRSAPDTVASESAEPVCRHLRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKPEEEAEDPSV
WLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKCDEEVKYCSSNRLGQVVDYVRKQ
AGVRTSKPAEKNNGHIELENKKLEKESKNEQEREKSENLAKETIPMDSASQITVKGLSNLGNTCFFNAVM
QNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEVNLEPPGPLTLAMSQFLSEMQENKKRVVTPKEL
FSQVCKKATRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEEVKNKVKDYEKKKAI
PSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSGKKSINDKNVKMTMEEEDKDSEEEKDD
SYMKSRSDLPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQERFLHFNELCATDYTEDNEREADTALAGEVE
VDTDSTHGSQEEATQIELSVNQKDLDGQESMIERTPDVQESPEDLGVKSANTESDLGIVTPAPECPRDFN
GAFLEERTSGELDIINGLKNLNLNAAVDPDEINIEIPNDSHSAPKVYEVMNEDPETAFCTLANREAFSTD
ECSIQHCLYQFTRNEKLQDANKLLCEVCSRRQCNGPKANIKGDRRHVYTNAKKQMLVSLAPPVLTLHLKR
FQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEESTRVLYSLYGVVEHSGTMRSGHYTAYAKERTAS
CHLSNLVLHGDIPQDCEMESTKGQWFHISDTHVQAVPITKVLNSQAYLLFYERIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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