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Report for CCDS28262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28262.1 Public Mus musculus 16 Stx19 23 108 98 CCDS HistoryNCBI Gene:68159Re-query CCDS DB by CCDS ID:28262.1Re-query CCDS DB by GeneID:68159See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055557.5 ENSMUSP00000055901.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055557.5Link to Ensembl Protein Viewer:ENSMUSP00000055901.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055557Re-query CCDS DB by Protein ID:ENSMUSP00000055901
Original member Current member NCBI NM_026588.1 NP_080864.1 Accepted alive Link to Nucleotide Sequence:NM_026588.1Link to Protein Sequence:NP_080864.1Re-query CCDS DB by Nucleotide ID:NM_026588Re-query CCDS DB by Protein ID:NP_080864Link to BLAST:NP_080864.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080864.1 292 Q8R1Q0 292 100% 0 0

Chromosomal Locations for CCDS 28262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 62821823 62822701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGAAAGACCGACTTCAAGAATTAAAACAGAAAACCAAGGAAATAGAACTCTCTCGGGACGGTCAGGTGT
TT
GTGGAAGAGGAACAAGGGGTGCTCGTCCAGCAAGCTGTCATTTATGAAAGAGAGCCTGTAGCTGAGAG
G
CACCTACATGAGATCCAAAAACTGCAGGAGAATATTAACAGTTTTGTGGATGATGTTCAACGATTTGGA
CAG
CAACAGAAAAGTCTAGTGGCTTCCATGAGAAGGTTTAGTCTACTTAAAAGAGACTCTACCATTGCAA
AG
GAGATAAAAATCCAAGCAGAACACATAAACAGGGCACTGGGTGACGTAGTCAAAGAAGTGAAAAAGTC
A
GAGGTTGAAAATGGTCCATCATCAGTGGTCACAAGGATACTGAAGTCTCAGTATGCTGCGATGTTCCGC
CGC
TTCCAGCAAACCATGTTTCTATACAATGACACAATAGCTTTAAAGCAAGAAAAATGCAAAACGTTTA
TT
GTTCGTCAGCTTGAAGTGGCCGGAAAAGAAGTTTCTGAAGAAGAAGTGAATGACATGCTTCACCATGG
A
AAATGGGAAGTTTTCAACGAAAGCTTACTTACAGAAACCAGTATCACTAAAGCACAGCTCTCGGAAATT
GAA
CAGAGACACAAGGAACTTGTGAATTTGGAGAACCAAGTGAAGGACCTCCGGGACCTTTTCATTCAGA
TA
TCTCTTCTGGTAGAGGAACAGGGAGAGAGCATCAACAGCATTGAGGTGATGGTGAACAGCACAAAAGA
T
TATGTTAACAACACCAAAGAGAAATTTGGACTGGCTGTAAAATACAAAAAAAGAAACCCCTGCCGGGCC
CTG
TGCTGTTGCTGTTGCCCACGCTGTGGCTCCAAATAA


Translation (292 aa):
MKDRLQELKQKTKEIELSRDGQVFVEEEQGVLVQQAVIYEREPVAERHLHEIQKLQENINSFVDDVQRFG
Q
QQKSLVASMRRFSLLKRDSTIAKEIKIQAEHINRALGDVVKEVKKSEVENGPSSVVTRILKSQYAAMFR
R
FQQTMFLYNDTIALKQEKCKTFIVRQLEVAGKEVSEEEVNDMLHHGKWEVFNESLLTETSITKAQLSEI
E
QRHKELVNLENQVKDLRDLFIQISLLVEEQGESINSIEVMVNSTKDYVNNTKEKFGLAVKYKKRNPCRA
L
CCCCCPRCGSK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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