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Report for CCDS28243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28243.1 Public Mus musculus 16 Or5h19 23 108 98 CCDS HistoryNCBI Gene:258319Re-query CCDS DB by CCDS ID:28243.1Re-query CCDS DB by GeneID:258319See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206428.1 ENSMUSP00000145932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206428.1Link to Ensembl Protein Viewer:ENSMUSP00000145932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206428Re-query CCDS DB by Protein ID:ENSMUSP00000145932
Original member Current member EBI ENSMUST00000207673.3 ENSMUSP00000147035.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207673.3Link to Ensembl Protein Viewer:ENSMUSP00000147035.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207673Re-query CCDS DB by Protein ID:ENSMUSP00000147035
Original member Current member NCBI NM_146322.2 NP_666434.2 Accepted alive Link to Nucleotide Sequence:NM_146322.2Link to Protein Sequence:NP_666434.2Re-query CCDS DB by Nucleotide ID:NM_146322Re-query CCDS DB by Protein ID:NP_666434Link to BLAST:NP_666434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666434.2 308 Q8VEX6 308 99.6753% 0 1

Chromosomal Locations for CCDS 28243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59035809 59036735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGAGAAGAATGCCACCCTGCTAACAGAGTTTGTTCTCACAGGACTCAGTCACCAGCCACTGTGGAACA
TCCCTCTGTTCCTGGTCTTCTTGGTGATCTATCTCATCACCATTGTGGGAAACGTCAGTTTGATCACTCT
CATCTGGACTGACCCTCACCTCCATATCCCCATGTATCTGTTTCTTGGAAGCTTGGCTTTTGTAGATACA
TCTATTTCTTCCATAGTGGTCCCAAAGATGCTTCTTAACTTCTTTGGTAAGAGCAAGGTGATCACTCTCT
CTGAATGTATGGCACAATTTTTTTTATTTAATATCAGTGCAACCACAGAGTGTTTCCTCTTGGCAGCGAT
GGCCTATGATCGCTATGTAGCCATATGCAAACCTTTACTCTACCCAGTAGTTATGACCAATGGTCTGTGT
GTGTGGCTAATAGCCTTGTCTTTTGTTGCTGGAATTATTCATGCTTTGATTCATGAAGGTTTTTTATTGA
GATTAACCTTCTGTAATTCCAACATGATACATCACTTTTATTGTGACATTATATCATTGTTAAAGATTTC
CTGTACTGACACTTCTCTTAATTACCTAATTGTTTTTATTTTCTCTGGCTCGATCCAGGTTTTCACTATT
TCAACTATCCTTGTCTCTTACACTATTATTTTGTTTACAATCTTAAAAAAGAAATCTGCCAAAGGCATAA
AGAAAGCCTTCTCCACCTGTGGGGCCCATCTCCTATCCGTGTCTTTATACTATGGGCCCCTTCTCTTCAT
GTATGTGCACCCTGCATCTTCAGAAGTAGATGATCAAGACATGATAGACTCTCTGTTTTACACTGTCATA
ATTCCTGTGTTAAATCCAATTATTTACAGTTTGAGAAATAAGCAAGTTATAGATTCACTGGCAAAATTTT
TAAAGAGAAATGTTTAG

Translation (308 aa):
MEKNATLLTEFVLTGLSHQPLWNIPLFLVFLVIYLITIVGNVSLITLIWTDPHLHIPMYLFLGSLAFVDT
SISSIVVPKMLLNFFGKSKVITLSECMAQFFLFNISATTECFLLAAMAYDRYVAICKPLLYPVVMTNGLC
VWLIALSFVAGIIHALIHEGFLLRLTFCNSNMIHHFYCDIISLLKISCTDTSLNYLIVFIFSGSIQVFTI
STILVSYTIILFTILKKKSAKGIKKAFSTCGAHLLSVSLYYGPLLFMYVHPASSEVDDQDMIDSLFYTVI
IPVLNPIIYSLRNKQVIDSLAKFLKRNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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