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Report for CCDS28236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28236.1 Public Mus musculus 16 Or5k1 23 108 98 CCDS HistoryNCBI Gene:259002Re-query CCDS DB by CCDS ID:28236.1Re-query CCDS DB by GeneID:259002See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049940.4 ENSMUSP00000052798.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049940.4Link to Ensembl Protein Viewer:ENSMUSP00000052798.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049940Re-query CCDS DB by Protein ID:ENSMUSP00000052798
Original member Current member EBI ENSMUST00000206205.2 ENSMUSP00000145946.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206205.2Link to Ensembl Protein Viewer:ENSMUSP00000145946.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000206205Re-query CCDS DB by Protein ID:ENSMUSP00000145946
Original member Current member NCBI NM_147000.2 NP_667211.2 Accepted alive Link to Nucleotide Sequence:NM_147000.2Link to Protein Sequence:NP_667211.2Re-query CCDS DB by Nucleotide ID:NM_147000Re-query CCDS DB by Protein ID:NP_667211Link to BLAST:NP_667211.2

Chromosomal Locations for CCDS 28236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58796879 58797844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGTTGAAGAAAACCACACCATGAAACGTGAGTTTGTCCTCACAGGATTTACAGACCACCCTGAAATGA
AGGGCCTTCTGTTTGCAGTATTCTTTTTCATCTATCTGATTACCATGATAGGGAATATGGGTCTGGTGAT
TCTGATTTCCAAAGAACGTTCTCTTCACACCCCAATGTACATCTTTCTGGGCAACCTGGCTTTTATAGAT
TCTTGTTGTGCCTGTGCTATTACCCCTAAAATGTTGGAGAACTTTTTCTCTGAGGACAGAATAATCTCTC
TGTATGAATGTATGGCACAGTTTTATTTTCTGTGCACTGTTGAAACTGCAGACTGCTTTCTTCTGTCAGC
AATGGCCTATGACCGCTATGTGGCCATATGCAACCCACTGCAGTACCACACCACGATGTCCAAGAAGCTC
TGCCTTCAGATGACGACGGGAGCTTTCATAGCTGGAAACCTGCATTCTATGGTTCATGTGGGGCTATTAT
TTAGACTAGCATTCTGTGGGTCTAATCAAATCAACCACTTTTATTGTGATATTCTTCCTTTGTACAGACT
CTCCTGTGTTGACCCCTATATCAACGAGCTTGTATTATTTGTCTTTTCAGGCTCAATCCAAGTCTTCACA
ATAGGTTGTGTCCTCATATCTTACCTTTTCATTGTTTATACAATTTTCCAAATGAAATCCAAAGAGGGAA
GGATCAAAGCCTTCTCCACCTGTGCATCCCACTTTCTGTCTGTTTCACTATTCTATGGATCTCTTTTCTT
TATGTACATTAGACCAAATTTGCTAGAAGAAGGTGATAAGGACATGCCAGCTGCTATTTTGTTTACAATA
GTGGTTCCCTTACTAAACCCATTTATTTATAGCTTGAGAAATAAAGAAGTAAAGAATGTCTTGCAGAAAA
TTCTGCAGAAAAAAATAATTTCAAAAAATTTTAAACAAGCATCTATTATTGTGTAA

Translation (321 aa):
MVEENHTMKREFVLTGFTDHPEMKGLLFAVFFFIYLITMIGNMGLVILISKERSLHTPMYIFLGNLAFID
SCCACAITPKMLENFFSEDRIISLYECMAQFYFLCTVETADCFLLSAMAYDRYVAICNPLQYHTTMSKKL
CLQMTTGAFIAGNLHSMVHVGLLFRLAFCGSNQINHFYCDILPLYRLSCVDPYINELVLFVFSGSIQVFT
IGCVLISYLFIVYTIFQMKSKEGRIKAFSTCASHFLSVSLFYGSLFFMYIRPNLLEEGDKDMPAAILFTI
VVPLLNPFIYSLRNKEVKNVLQKILQKKIISKNFKQASIIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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