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Report for CCDS28215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28215.1 Public Mus musculus 16 Zpld1 23 108 98 CCDS HistoryNCBI Gene:239852Re-query CCDS DB by CCDS ID:28215.1Re-query CCDS DB by GeneID:239852See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036412.3 ENSMUSP00000049012.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036412.3Link to Ensembl Protein Viewer:ENSMUSP00000049012.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000036412Re-query CCDS DB by Protein ID:ENSMUSP00000049012
Original member Current member EBI ENSMUST00000143914.7 ENSMUSP00000119774.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143914.7Link to Ensembl Protein Viewer:ENSMUSP00000119774.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143914Re-query CCDS DB by Protein ID:ENSMUSP00000119774
Original member NCBI NM_178720.4 NP_848835.1 Updated not alive Link to Nucleotide Sequence:NM_178720.4Link to Protein Sequence:NP_848835.1Re-query CCDS DB by Nucleotide ID:NM_178720Re-query CCDS DB by Protein ID:NP_848835
Current member NCBI NM_178720.5 NP_848835.1 Accepted alive Link to Nucleotide Sequence:NM_178720.5Link to Protein Sequence:NP_848835.1Re-query CCDS DB by Nucleotide ID:NM_178720Re-query CCDS DB by Protein ID:NP_848835Link to BLAST:NP_848835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848835.1 415 Q8BGZ8 415 100% 0 0

Chromosomal Locations for CCDS 28215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55226357 55226532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55226934 55226963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55232208 55232316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55233495 55233666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55239824 55239904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55241337 55241434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55246609 55246681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55248238 55248419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55251568 55251788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55267194 55267299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGAACGAGTATGGTTGCTGTTCCTTCTAGCGATTAGAGTGAGTCCAGGGTCTGCTCAGTTCAACAGTT
ACAACTGTGATGCCAACCTCCACAGCAGATTTCCTGCGGAAAGAGACATCAGTGTCTACTGTGGAGTGCA
GGCCATTACGATGAAGATTAATTTTTGCACGGTCCTTTTCTCGGGATATTCAGAAACAGATCTGGCACTG
AATGGAAGACATGGGGATTCCCACTGCAGGGGCTTCATCAATAACAACACCTTTCCAGCAGTGGTCATTT
TCATCATTAATCTCAGCACCTTGGAGGGCTGTGGAAACAATTTAGTGGTGTCCACAATTCCTGGTGTTGG
TGCTTCTGGAAATGCTACCACAGTACAGATAGGAAATATTTCTGGATATATTGATACTCCGGACCCTCCA
GCAGTTATCAGCTATCTTCCTGGGCTTCTTTACAAATTTAGTTGTAGTTATCCGTTGGAATACCTGGTTA
ATAACACCCAGCTTGCTTCGTCCTCAGCTGCTATTTCTGTGAGAGAGAACAATGGGACATTTGTCAGTAC
TTTGAACTTGCTCCTTTATAACGATTCAACCTACAGGGAGCAATTAATTATCCCGAGTATAGGATTACCC
TTGAAAACCAAAGTGTTTGCAGCTGTGCAAGCTACTAATCTGGATGGCAGATGGAATGTTTTAATGGATT
ATTGCTACACAACCCCATCTGGGAATCCAAATGATGATACTCGGTATGATCTCTTCCTTAGCTGTGACAA
AGATCCTCAGACCACTGTCATCGAAAATGGCAGAAGCCAGCGAGGCCGGTTTTCATTTGAAGTCTTCCGT
TTTGTGAAACACAAGAATCAAAAGATGTCCACTGTGTTCCTGCACTGCCTCACGAAACTCTGCAGAGCTG
ATGACTGTCCTCTTCTCATGCCAATTTGTGGCAACAGAAAAAGGAGAGATGCTCAGAGCTGGACAACGTG
GGCCCCGCAGAGCACTTCTGGAAATGCGGTCCTGTCTGCAGGACCCATCATCACCCGGAGCGATGAGACT
CCAACCAACAATTCACAGCTTGGTTCGCTGAGTGTGCCTCCCTTTCAGCTGAATGCCGTCACCAGCTCTC
TGATATCAGGAATGGTCATTCTGGGAGTCCTGTGTTTCTCTCTCCTCTTGTGTTCACTGGCCCTTCTACA
CCGAAAGGGATCTACCAGCTTGGTATTGAATGGTGTAAGAAATCCTGTCTTTGAGTGA

Translation (415 aa):
MERVWLLFLLAIRVSPGSAQFNSYNCDANLHSRFPAERDISVYCGVQAITMKINFCTVLFSGYSETDLAL
NGRHGDSHCRGFINNNTFPAVVIFIINLSTLEGCGNNLVVSTIPGVGASGNATTVQIGNISGYIDTPDPP
AVISYLPGLLYKFSCSYPLEYLVNNTQLASSSAAISVRENNGTFVSTLNLLLYNDSTYREQLIIPSIGLP
LKTKVFAAVQATNLDGRWNVLMDYCYTTPSGNPNDDTRYDLFLSCDKDPQTTVIENGRSQRGRFSFEVFR
FVKHKNQKMSTVFLHCLTKLCRADDCPLLMPICGNRKRRDAQSWTTWAPQSTSGNAVLSAGPIITRSDET
PTNNSQLGSLSVPPFQLNAVTSSLISGMVILGVLCFSLLLCSLALLHRKGSTSLVLNGVRNPVFE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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