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Report for CCDS28174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28174.1 Public Mus musculus 16 Upk1b 23 108 98 CCDS HistoryNCBI Gene:22268Re-query CCDS DB by CCDS ID:28174.1Re-query CCDS DB by GeneID:22268See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057767.5 ENSMUSP00000052469.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057767.5Link to Ensembl Protein Viewer:ENSMUSP00000052469.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057767Re-query CCDS DB by Protein ID:ENSMUSP00000052469
Original member Current member NCBI NM_178924.4 NP_849255.2 Accepted alive Link to Nucleotide Sequence:NM_178924.4Link to Protein Sequence:NP_849255.2Re-query CCDS DB by Nucleotide ID:NM_178924Re-query CCDS DB by Protein ID:NP_849255Link to BLAST:NP_849255.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849255.2 260 Q9Z2C6 260 100% 0 0

Chromosomal Locations for CCDS 28174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38774095 38774145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38776187 38776270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38779969 38780148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38784194 38784316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38784885 38784959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38787094 38787294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38787975 38788043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCCAAAGACGATTCCACTGTTCGTTGCTTCCAGGGCCTGTTGATTTTTGGACACGTAATTGTTGGTA
TGTGTGGCATCGCCCTGACAGCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTTCT
CGAAGCCACCAACAATGATGATATCTTCGGGGCAGCTTGGATAGGCATGTTCGTGGGCATCTGCCTCTTC
TGCTTGTCCGTTCTAGCCATAGTAGGAATTATGAAGTCCAACAGGAAAATCCTCTTGGCGTACTTCATCA
TGATGTTTATAGTGTACGGTTTTGAAGTGGCATCTTGCATCACAGCAGCAACACAACGCGACTTTTTCAC
AACCAACCTCTTCCTGAAGCAGATGCTGATGAGGTATCAAAACAACAGTCCCCCAACCAATGACGACGAA
TGGAAGAACAACGGGGTCACCAAGACCTGGGATAGGCTCATGCTGCAGGACCACTGCTGTGGTGTAAACG
GTCCGTCAGACTGGCAGAAATACACCTCTGCCTTCCGGGTGGAGAATAACGATGCTGACTACCCCTGGCC
TCGGCAGTGCTGCGTCATGGACAAGCTTAAAGAGCCTCTCAACCTGGACGCTTGCAAACTTGGAGTGCCT
GGTTATTACCACAGTCAGGGCTGCTATGAACTGATCTCTGGACCAATGGACCGGCATGCCTGGGGAGTTG
CCTGGTTTGGATTTGCCATCCTCTGCTGGACTTTTTGGGTTCTCCTGGGCACCATGTTCTACTGGAGCAG
AATTGAATATTAA

Translation (260 aa):
MAKDDSTVRCFQGLLIFGHVIVGMCGIALTAECIFFVSDQHSLYPLLEATNNDDIFGAAWIGMFVGICLF
CLSVLAIVGIMKSNRKILLAYFIMMFIVYGFEVASCITAATQRDFFTTNLFLKQMLMRYQNNSPPTNDDE
WKNNGVTKTWDRLMLQDHCCGVNGPSDWQKYTSAFRVENNDADYPWPRQCCVMDKLKEPLNLDACKLGVP
GYYHSQGCYELISGPMDRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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