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Report for CCDS28161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28161.1 Public Mus musculus 16 Ndufb4 23 108 98 CCDS HistoryNCBI Gene:68194Re-query CCDS DB by CCDS ID:28161.1Re-query CCDS DB by GeneID:68194See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023514.3 ENSMUSP00000023514.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023514.3Link to Ensembl Protein Viewer:ENSMUSP00000023514.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023514Re-query CCDS DB by Protein ID:ENSMUSP00000023514
Original member NCBI NM_026610.1 NP_080886.1 Updated not alive Link to Nucleotide Sequence:NM_026610.1Link to Protein Sequence:NP_080886.1Re-query CCDS DB by Nucleotide ID:NM_026610Re-query CCDS DB by Protein ID:NP_080886
Current member NCBI NM_026610.2 NP_080886.1 Accepted alive Link to Nucleotide Sequence:NM_026610.2Link to Protein Sequence:NP_080886.1Re-query CCDS DB by Nucleotide ID:NM_026610Re-query CCDS DB by Protein ID:NP_080886Link to BLAST:NP_080886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080886.1 129 Q9CQC7 129 100% 0 0

Chromosomal Locations for CCDS 28161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 37647657 37647719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37649014 37649160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37654180 37654359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGTCGGGTTCCAAGTATAAGCCTGCGCCCCTGGCCACTCTCCCCAGTACCCTCGACCCTGCCGAGTATG
ACGTGTCTCCGGAGACCAGAAGGGCGCAGGTCGAGCGCTTGAGCATAAGGGCCCGGCTTAAACGGGAGTA
TCTGCTTCAGTACAACGACCCCAAACGCGTGTCGCACATCGAGGATCCTGCCTTGATTCGCTGGACCTAT
GCAAGATCAGCAAATATTTATCCTAATTTCAGGCCCACTCCCAAGAACTCACTTTTAGGAGCTGTGGCAG
GGTTTGGGCCCCTCATCTTCTGGTATTATGTTTTCAAAACAGACAGGGACAGAAAGGAAAGACTTATCCA
GGAAGGAAAACTGGACAGAAAATTTAACATCTCCTACTAA

Translation (129 aa):
MSGSKYKPAPLATLPSTLDPAEYDVSPETRRAQVERLSIRARLKREYLLQYNDPKRVSHIEDPALIRWTY
ARSANIYPNFRPTPKNSLLGAVAGFGPLIFWYYVFKTDRDRKERLIQEGKLDRKFNISY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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