NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2811.1 Public Homo sapiens 3 SEMA3F 24 110 108 CCDS HistoryNCBI Gene:6405Re-query CCDS DB by CCDS ID:2811.1Re-query CCDS DB by GeneID:6405See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2811.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000002829.8 ENSP00000002829.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000002829.8Link to Ensembl Protein Viewer:ENSP00000002829.3Re-query CCDS DB by Nucleotide ID:ENST00000002829Re-query CCDS DB by Protein ID:ENSP00000002829
Original member Current member NCBI NM_004186.5 NP_004177.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004186.5Link to Protein Sequence:NP_004177.3Re-query CCDS DB by Nucleotide ID:NM_004186Re-query CCDS DB by Protein ID:NP_004177Link to BLAST:NP_004177.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004177.3 785 Q13275-1 785 100% 0 0

Chromosomal Locations for CCDS 2811.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50159623 50159734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50173793 50173953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50174052 50174114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50174231 50174350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50175096 50175188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50176768 50176861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182284 50182403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182644 50182783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182904 50183018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50183186 50183255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50183420 50183564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50184592 50184814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185443 50185531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185666 50185707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185889 50186046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50186281 50186348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50186613 50186746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50187705 50188115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGCTTGTCGCCGGTCTTCTTCTCTGGGCTTCCCTACTGACCGGGGCCTGGCCATCCTTCCCCACCCAGG
ACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAGAGCTGAAGGCCACAGGCACCGCCCACTT
CTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAAGGACGAGGACCACGACCGCATGTAC
GTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGCGAGCCCCTCATTATACACT
GGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTCAACGGCGAGTGTGGGAA
CTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCC
ATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAGGCCACACCATGGACCCAGACTCAGGCGGTCAGAG
GCCGCGGCAGCAGAGCCACGGATGGTGCCCTCCGCCCGATGCCCACAGCCCCACGCCAGGATTACATCTT
CTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCA
TCGGCCCTCATCAATGAGGAGCTCTATGCTGGTGTGTACATCGATTTTATGGGCACTGATGCAGCCATCT
TCCGCACACTTGGAAAGCAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTC
GTTCATCCATGCTGAGCTCATTCCTGACAGTGCGGAGCGCAATGATGATAAGCTTTACTTCTTCTTCCGT
GAGCGGTCGGCAGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGCGCATTTGCCTGAACGATG
ACGGTGGTCACTGTTGCCTGGTCAACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCC
GGGCGAGGATGGCATTGAGACTCACTTTGATGAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGACGTG
AGGAACCCTGTCATTTACGCTGTCTTTACCTCCTCTGGCTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCT
ACTCCATGGCTGATATTCGCATGGTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTG
GATGCCCTTCTCAGGGAAGATGCCCTACCCACGGCCGGGCACGTGCCCTGGTGGAACCTTCACGCCATCT
ATGAAGTCCACCAAGGATTATCCTGATGAGGTGATCAACTTCATGCGCAGCCACCCACTCATGTACCAGG
CCGTGTACCCTCTGCAGCGGCGGCCCCTGGTAGTCCGCACAGGTGCTCCCTACCGCCTTACCACTATTGC
CGTGGACCAGGTGGATGCAGCCGACGGGCGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTG
CAGAAGGTCATTGTGCTGCCCAAGGATGACCAGGAGTTGGAGGAGCTCATGCTGGAGGAGGTGGAGGTCT
TCAAGGATCCAGCACCCGTCAAGACCATGACCATCTCTTCTAAGAGGCAACAACTCTACGTGGCGTCAGC
CGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGCCTT
GCCCGGGACCCTTACTGTGCCTGGGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGA
GCCGCCGGCAGGACGTCCGGCACGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAA
GAATGCCGTGGAGTCTGTGCAGTATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAGCCCCGCTCG
CCCCAAGCCACTGTTAAGTGGCTGTTCCAGCGAGATCCTGGTGACCGGCGCCGAGAGATTCGTGCAGAGG
ACCGCTTCCTGCGCACAGAGCAGGGCTTGTTGCTCCGTGCACTGCAGCTCAGCGATCGTGGCCTCTACTC
CTGCACAGCCACTGAGAACAACTTTAAGCACGTCGTCACACGAGTGCAGCTGCATGTACTGGGCCGGGAC
GCCGTCCATGCTGCCCTCTTCCCACCACTGTCCATGAGCGCCCCGCCACCCCCAGGCGCAGGCCCCCCAA
CGCCTCCTTACCAGGAGTTAGCCCAGCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCA
GGGTTACTGGCGCCATGTGCCCCCCAGCCCCAGGGAGGCTCCAGGGGCACCCCGGTCTCCTGAGCCCCAG
GACCAGAAAAAGCCCCGGAACCGCCGGCACCACCCTCCGGACACATGA

Translation (785 aa):
MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMY
VGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAYNP
MCTYVNRGRRAQATPWTQTQAVRGRGSRATDGALRPMPTAPRQDYIFYLEPERLESGKGKCPYDPKLDTA
SALINEELYAGVYIDFMGTDAAIFRTLGKQTAMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFR
ERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDV
RNPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPS
MKSTKDYPDEVINFMRSHPLMYQAVYPLQRRPLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTV
QKVIVLPKDDQELEELMLEEVEVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCL
ARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRS
PQATVKWLFQRDPGDRRREIRAEDRFLRTEQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHVLGRD
AVHAALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQ
DQKKPRNRRHHPPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH