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Report for CCDS28084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28084.1 Public Mus musculus 16 Tprg1 23 108 98 CCDS HistoryNCBI Gene:71338Re-query CCDS DB by CCDS ID:28084.1Re-query CCDS DB by GeneID:71338See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056087.3 ENSMUSP00000052585.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056087.3Link to Ensembl Protein Viewer:ENSMUSP00000052585.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056087Re-query CCDS DB by Protein ID:ENSMUSP00000052585
Original member Current member NCBI NM_175165.3 NP_780374.1 Accepted alive Link to Nucleotide Sequence:NM_175165.3Link to Protein Sequence:NP_780374.1Re-query CCDS DB by Nucleotide ID:NM_175165Re-query CCDS DB by Protein ID:NP_780374Link to BLAST:NP_780374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780374.1 279 Q8CB49 279 100% 0 0

Chromosomal Locations for CCDS 28084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 25317261 25317482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 25328263 25328354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 25356941 25357117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 25412767 25412920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 25422121 25422315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGTCAACAATTGGGAGCTTTGACGGATTCCAGCCCGTGTCTTTGAAGCAAGAGGAAGAGGACCAACCCT
CTGAAAATGACCACTTGTCCACAAAGGAGGGGAATTCAGGCAAGGACCCAGGATCAAGGAGGATTTCAAG
ACAGCAGAGTATAACTAAAGCGACACTGTACCCCAATCCTTATCGCCAGCCCTATGTTTCACGGAAGTAC
TTTGTTACACGGCCAGGGGCCATTGAGACTGCTGTGGAAGACTTGAAAGGCCACATAGCACAGACTTCTG
GGGAGACTGTTCAAGGCTTCTGGCTCCTGACAGAGATTGATCACTGGAACAATGAGAAGGAGAAGATCCT
GCTACTCACAGACAAGACCCTCTTGATCTGCAAATACGACTTCATCATGCTCAGCTGTGTGCAGGTGCAG
CAGGTTCCCCTGAATGCCATCTGCTGCATCTGTCTGGGCAAGTTTGTTTTCCCAGGGATGTCTCTGGACA
AGAGACCAGGAGATGGCCTAAGGATTTTCTGGGGGAGCACCGAGGGGTGGTCTCTACTGTCTCGTTGGAA
CCCGTGGTCCACTGAAGTTCCCTATGCCACCTTCACAGAGCATCCTATGAAACAGACCAGTGAGAAGTTC
CTTGAGATCTGCAAGTTGTCTGAGTTCACCTCTAAGCTTGTTCCAGCCATCGAGAATGCCCACAAGAATT
CTGCTGGATCTGGAAGTGGAAAGGAACTGGTGGTGTTAACCCAACCTATACTGATTGAGACCTACACAGG
GCTCATGTCATTCATTGGAAACCGCAACAAACTTGGCTATTCCCTTGCTCGTGGGAGTATTGGCTTTTGA

Translation (279 aa):
MSTIGSFDGFQPVSLKQEEEDQPSENDHLSTKEGNSGKDPGSRRISRQQSITKATLYPNPYRQPYVSRKY
FVTRPGAIETAVEDLKGHIAQTSGETVQGFWLLTEIDHWNNEKEKILLLTDKTLLICKYDFIMLSCVQVQ
QVPLNAICCICLGKFVFPGMSLDKRPGDGLRIFWGSTEGWSLLSRWNPWSTEVPYATFTEHPMKQTSEKF
LEICKLSEFTSKLVPAIENAHKNSAGSGSGKELVVLTQPILIETYTGLMSFIGNRNKLGYSLARGSIGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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