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Report for CCDS2806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2806.1 Public Homo sapiens 3 TRAIP 24 110 108 CCDS HistoryNCBI Gene:10293Re-query CCDS DB by CCDS ID:2806.1Re-query CCDS DB by GeneID:10293See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331456.7 ENSP00000328203.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331456.7Link to Ensembl Protein Viewer:ENSP00000328203.2Re-query CCDS DB by Nucleotide ID:ENST00000331456Re-query CCDS DB by Protein ID:ENSP00000328203
Original member Current member NCBI NM_005879.3 NP_005870.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005879.3Link to Protein Sequence:NP_005870.2Re-query CCDS DB by Nucleotide ID:NM_005879Re-query CCDS DB by Protein ID:NP_005870Link to BLAST:NP_005870.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005870.2 469 Q9BWF2 469 100% 0 0

Chromosomal Locations for CCDS 2806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49829103 49829225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49829458 49829508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49829617 49829766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49830020 49830068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49831916 49832068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49839772 49839860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49840284 49840373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49840985 49841072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49841826 49841939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49842453 49842547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49843801 49843928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49844541 49844580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49847525 49847608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49848143 49848200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49856356 49856453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGCCTATCCGTGCTCTGTGCACTATCTGCTCCGACTTCTTCGATCACTCCCGCGACGTGGCCGCCATCC
ACTGCGGCCACACCTTCCACTTGCAGTGCCTAATTCAGTGGTTTGAGACAGCACCAAGTCGGACCTGCCC
ACAGTGCCGAATCCAGGTTGGCAAAAGAACCATTATCAATAAGCTCTTCTTTGATCTTGCCCAGGAGGAG
GAGAATGTCTTGGATGCAGAATTCTTAAAGAATGAACTGGACAATGTCAGAGCCCAGCTTTCCCAGAAAG
ACAAGGAGAAACGAGACAGCCAGGTCATCATCGACACTCTGCGGGATACGCTGGAAGAACGCAATGCTAC
TGTGGTATCTCTGCAGCAGGCCTTGGGCAAGGCCGAGATGCTGTGCTCCACACTGAAAAAGCAGATGAAG
TACTTAGAGCAGCAGCAGGATGAGACCAAACAAGCACAAGAGGAGGCCCGCCGGCTCAGGAGCAAGATGA
AGACCATGGAGCAGATTGAGCTTCTACTCCAGAGCCAGCGCCCTGAGGTGGAGGAGATGATCCGAGACAT
GGGTGTGGGACAGTCAGCGGTGGAACAGCTGGCTGTGTACTGTGTGTCTCTCAAGAAAGAGTACGAGAAT
CTAAAAGAGGCACGGAAGGCCTCAGGGGAGGTGGCTGACAAGCTGAGGAAGGATTTGTTTTCCTCCAGAA
GCAAGTTGCAGACAGTCTACTCTGAATTGGATCAGGCCAAGTTAGAACTGAAGTCAGCCCAGAAGGACTT
ACAGAGTGCTGACAAGGAAATCATGAGCCTGAAAAAGAAGCTAACGATGCTGCAGGAAACCTTGAACCTG
CCACCAGTGGCCAGTGAGACTGTCGACCGCCTGGTTTTAGAGAGCCCAGCCCCTGTGGAGGTGAATCTGA
AGCTCCGCCGGCCATCCTTCCGTGATGATATTGATCTCAATGCTACCTTTGATGTGGATACTCCCCCAGC
CCGGCCCTCCAGCTCCCAGCATGGTTACTACGAAAAACTTTGCCTAGAGAAGTCACACTCCCCAATTCAG
GATGTCCCCAAGAAGATATGCAAAGGCCCCAGGAAGGAGTCCCAGCTCTCACTGGGTGGCCAGAGCTGTG
CAGGAGAGCCAGATGAGGAACTGGTTGGTGCCTTCCCTATTTTTGTCCGGAATGCCATCCTAGGCCAGAA
ACAGCCCAAGAGGCCCAGGTCAGAGTCCTCTTGCAGCAAAGATGTGGTAAGGACAGGCTTCGATGGGCTC
GGTGGCCGGACAAAATTCATCCAGCCTACTGACACAGTCATGATCCGCCCATTGCCTGTTAAGCCCAAGA
CCAAGGTTAAGCAGAGGGTGAGGGTGAAGACAGTGCCTTCTCTCTTCCAGGCCAAGCTGGACACCTTCCT
GTGGTCGTGA

Translation (469 aa):
MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINKLFFDLAQEE
ENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVSLQQALGKAEMLCSTLKKQMK
YLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEMIRDMGVGQSAVEQLAVYCVSLKKEYEN
LKEARKASGEVADKLRKDLFSSRSKLQTVYSELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNL
PPVASETVDRLVLESPAPVEVNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQ
DVPKKICKGPRKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL
GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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