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Report for CCDS28027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28027.1 Public Mus musculus 16 Cdc45 23 108 98 CCDS HistoryNCBI Gene:12544Re-query CCDS DB by CCDS ID:28027.1Re-query CCDS DB by GeneID:12544See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000028.13 ENSMUSP00000000028.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000028.13Link to Ensembl Protein Viewer:ENSMUSP00000000028.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000028Re-query CCDS DB by Protein ID:ENSMUSP00000000028
Original member NCBI NM_001358206.1 NP_001345135.1 Updated not alive Link to Nucleotide Sequence:NM_001358206.1Link to Protein Sequence:NP_001345135.1Re-query CCDS DB by Nucleotide ID:NM_001358206Re-query CCDS DB by Protein ID:NP_001345135
Current member NCBI NM_001358206.2 NP_001345135.1 Accepted alive Link to Nucleotide Sequence:NM_001358206.2Link to Protein Sequence:NP_001345135.1Re-query CCDS DB by Nucleotide ID:NM_001358206Re-query CCDS DB by Protein ID:NP_001345135Link to BLAST:NP_001345135.1
Original member NCBI NM_009862.2 NP_033992.2 Updated not alive Link to Nucleotide Sequence:NM_009862.2Link to Protein Sequence:NP_033992.2Re-query CCDS DB by Nucleotide ID:NM_009862Re-query CCDS DB by Protein ID:NP_033992
Current member NCBI NM_009862.3 NP_033992.2 Accepted alive Link to Nucleotide Sequence:NM_009862.3Link to Protein Sequence:NP_033992.2Re-query CCDS DB by Nucleotide ID:NM_009862Re-query CCDS DB by Protein ID:NP_033992Link to BLAST:NP_033992.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345135.1 566 Q9Z1X9 566 100% 0 0
NP_033992.2 566 Q9Z1X9 566 100% 0 0

Chromosomal Locations for CCDS 28027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18781898 18781962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18784806 18784882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18785073 18785191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18786769 18786852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18786930 18787068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18793178 18793339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18794762 18794860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18795095 18795226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18795825 18795944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18797349 18797399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18798676 18798737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18801801 18801849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18805382 18805437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18807280 18807423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18808732 18808869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18810389 18810481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18811305 18811364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18811515 18811565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGTTCGTGACCGATTTCCGCAAGGAGTTCTACGAGACGGTCCACAACCAGAGGGTCCTTCTCTTTGTGG
CCTCGGACGTGGATGCCTTGTGTGCTTGCAAGATCCTCCAGGCCCTGTTTCAGTGTGACCACGTCCAGTA
TACGCTGGTTCCGGTTTCTGGGTGGCAAGAACTTGAAACTGCATATCTTGAACATAAAGAGCAGTTCTCC
TATTTCATCCTCATAAACTGTGGAGCCAACGTGGACCTGTTGGATATCCTTCAGCCTGATGAAGACAGTA
TATTTTTTGTGTGTGATACCCACAGGCCAGTGAACGTTGTGAATGTGTACAATGACACTCAGATCAAATT
GCTTATTAAACAAGAGGATGACCTTGAGGTTCCTGCCTACGACGACATCTTTAGAGATGAAGCAGAGGAT
GAAGATCTTTCAGACAGTGACGGTGATGGGTCAGAGCCTTCAGAGAAGCGCACACGGTTAGAAGAGGAGA
TAGTGGAGCGAAACAGGAAGAGGAGGCAGCGCAGGGAGTGGGAGGCCCGAAGGAAAGACATCCTCTTTGA
CTACGAGCAGTATGAATATTATGGGACATCGTCGGCCATGGTGATGTTTGACCTGGCGTGGATGATGTCC
AAGGACCTGAATGACATGCTGTGGTGGGCCATTGTTGGACTGACAGACCAGTGGGTGCATGACAAGATCA
CTCAAATGAAGTACGTGACTGATGTTGGCATCCTGCAGCGTCATGTGTCCCGTCATAACCACCGAAACGA
GGCGGAGGAGAACATGCTCTCTGTAGACTGCACCCGGATCTCCTTCGAGTATGACCTCTGCCTGGTACTG
TATCAGCACTGGTCCCTCCATGAAAGCCTGTACAACACCAGCTACACAGCAGCCAGGTTTAAGCTCTGGT
CTGTGCATGGGCAGAAACGACTCCAGGAGTTCCTTGCAGACATGGGGCTTCCCCTGAAGCAAGTCAAGCA
GAAATTTCAGTCCATGGACGTTTCCTTGAAGGGGAATCTGCGAGAAATGATTGAAGAATCTGCAAATAAA
TTTGGGATGAAGGACATGCGTGTACAGACTTTCAGCATTCAGTTTGGGTTCAAGCATAAATTCCTGGCCA
GTGATGTCGTCTTTGCCACCATGTCTCTAATGGAGAGTCCTGAGAAGGATGGCTCAGGGACAGACCACTT
CATCCAGGCTCTCGATAGCCTCTCCAGGAGTAACCTGGACAAGCTATACCTTGGTCTAGAGCTCGCCAAG
AAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCTGTACCAACCTCGTCACTTCCCAGGGCC
CTTTTCTCTACTGCTCACTCATGGAGGGCACTCCAGATGTCACCCTGTTTTCCAAGCCAGCATCCTTGAG
TCTGCTCAGCAGACATCTGCTCAAGTCCTTTGTGTACTCGACAAAGAATCGACGATGCAAGCTGCTGCCC
CTGGTGATGGCTGCCCCGCTGAGCGTGGAACAGGGCACAGTGACCGTGGTGGGCATCCCCCCAGAGACTG
ATAGCTCGGATAGAAAGAACTTTTTTGGTCGGGCTTTTGAGAAGGCAGCAGAAAGCACCAGCTCTCGGAC
TCTACACAATTACTTTGACCTCTCAGTAATTGAGCTGAAGGCTGAGGACCGGAGCAAGTTCCTGGACGCT
CTTGTGTCACTGCTGTCCTGA

Translation (566 aa):
MFVTDFRKEFYETVHNQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELETAYLEHKEQFS
YFILINCGANVDLLDILQPDEDSIFFVCDTHRPVNVVNVYNDTQIKLLIKQEDDLEVPAYDDIFRDEAED
EDLSDSDGDGSEPSEKRTRLEEEIVERNRKRRQRREWEARRKDILFDYEQYEYYGTSSAMVMFDLAWMMS
KDLNDMLWWAIVGLTDQWVHDKITQMKYVTDVGILQRHVSRHNHRNEAEENMLSVDCTRISFEYDLCLVL
YQHWSLHESLYNTSYTAARFKLWSVHGQKRLQEFLADMGLPLKQVKQKFQSMDVSLKGNLREMIEESANK
FGMKDMRVQTFSIQFGFKHKFLASDVVFATMSLMESPEKDGSGTDHFIQALDSLSRSNLDKLYLGLELAK
KHLQATQQTIASCLCTNLVTSQGPFLYCSLMEGTPDVTLFSKPASLSLLSRHLLKSFVYSTKNRRCKLLP
LVMAAPLSVEQGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSRTLHNYFDLSVIELKAEDRSKFLDA
LVSLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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