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Report for CCDS28023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28023.1 Public Mus musculus 16 Tbx1 23 108 98 CCDS HistoryNCBI Gene:21380Re-query CCDS DB by CCDS ID:28023.1Re-query CCDS DB by GeneID:21380See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232335.1 ENSMUSP00000156061.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232335.1Link to Ensembl Protein Viewer:ENSMUSP00000156061.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232335Re-query CCDS DB by Protein ID:ENSMUSP00000156061
Original member NCBI NM_011532.2 NP_035662.1 Updated not alive Link to Nucleotide Sequence:NM_011532.2Link to Protein Sequence:NP_035662.1Re-query CCDS DB by Nucleotide ID:NM_011532Re-query CCDS DB by Protein ID:NP_035662
Current member NCBI NM_011532.3 NP_035662.1 Accepted alive Link to Nucleotide Sequence:NM_011532.3Link to Protein Sequence:NP_035662.1Re-query CCDS DB by Nucleotide ID:NM_011532Re-query CCDS DB by Protein ID:NP_035662Link to BLAST:NP_035662.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035662.1 488 P70323-2 488 99.7951% 0 1

Chromosomal Locations for CCDS 28023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18581993 18582456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18582724 18582824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18582907 18582974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18583419 18583574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18584084 18584255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18585035 18585136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18586536 18586939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGATCTCCGCCGTGTCTAGTCCGTGGCTCACGCAGCTCTCGCACTTCTGCGACGTTGCAGCCTTCGCAG
CCAGCAGTCTGAGCGGCCTGGGATCCCCGTCGCCTGGCGCCGACCCGTTCGGCCCTCGCGAGCCGCCGCC
ACCGCGCTACGATCCGTGCGCTGCAGTCCCCGGTGCCCCGGGCCCGCCGCCGCCGCGCGCCTATCCTTTC
GCGCCCGCCCCCGGGGCGGCTGGCAGCTCGGCGGCGGAGTCCGAGGGTCCGGGGGCTAGCCGCGCGGCTG
CGGTCAAGGCTCCGGTGAAGAAGAACCCGAAGGTGGCCAGCGTGAGCGTGCAGCTGGAGATGAAGGCGCT
GTGGGACGAGTTCAATCAGCTGGGCACCGAGATGATCGTCACCAAGGCAGGCAGACGAATGTTCCCCACG
TTCCAAGTGAAGCTTTTTGGAATGGATCCCATGGCCGACTACATGCTGCTCATGGACTTTGTGCCCGTAG
ATGACAAGCGCTACCGGTATGCTTTCCATAGCTCCTCCTGGCTGGTGGCCGGCAAGGCAGATCCTGCTAC
ACCTGGCCGAGTACACTACCACCCGGACTCGCCGGCTAAGGGCGCACAGTGGATGAAACAGATTGTGTCT
TTCGACAAGCTGAAACTGACCAATAACCTGCTGGATGACAATGGCCATATTATTCTCAACTCCATGCACA
GATATCAGCCCCGATTCCATGTTGTCTATGTGGACCCTCGAAAAGACAGTGAGAAATATGCAGAGGAGAA
CTTCAAAACTTTTGTGTTTGAGGAGACACGCTTCACTGCAGTCACTGCCTACCAGAATCACCGGATCACG
CAGCTTAAGATTGCCAGCAACCCCTTCGCCAAAGGCTTCCGGGATTGCGACCCGGAGGACTGGCCCCGGA
ACCACCGGCCCGGAGCGCTGCCGCTCGTGAGTGCCTTTGCTCGCTCTCGGAATCCCGTGGCTTCCCCCAC
GCAGCCCAATGGCTCAGACAAAGACGCTGCAGAAGCCCGGCGCGAGTTCGACCGTGACTCCGGACCCGCA
GCGCTCGGCGACGCTACGCACCCGCCGCAGCTGCTGGCGCGCGTGCTGAGCCCCGCACTGCCCGGGCCTG
GCGGCCTCGTCCCGCTACCCGGCGGATCCGGAGGCCGCCACAGTCCCCCGCACGCCGATCTGCGCCTGGA
GGCGCCGGGCGCGTCCGAGCCGCTGCACCACCATCCCTACAAGTACCCGGCCGCCGCCTACGACCACTAC
CTCGGGGCCAAGAGCCGGCCGGCGCCCTACCCGCTGCCAGGCCTGCGCGGCCACGGCTACCACCCGCACG
CGCACCCGCACGCGCACCCGCACCATCACCACCACCCCGCGGTGAACCCGGCCGCCGCCGCCGCTGCTGC
CGCAGCAGCCAACGTGTACTCGTCGGCGGCCGCGCCGCCCGGTGCCTACGACTACTGCCCCAGATAG

Translation (488 aa):
MISAVSSPWLTQLSHFCDVAAFAASSLSGLGSPSPGADPFGPREPPPPRYDPCAAVPGAPGPPPPRAYPF
APAPGAAGSSAAESEGPGASRAAAVKAPVKKNPKVASVSVQLEMKALWDEFNQLGTEMIVTKAGRRMFPT
FQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVS
FDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRIT
QLKIASNPFAKGFRDCDPEDWPRNHRPGALPLVSAFARSRNPVASPTQPNGSDKDAAEARREFDRDSGPA
ALGDATHPPQLLARVLSPALPGPGGLVPLPGGSGGRHSPPHADLRLEAPGASEPLHHHPYKYPAAAYDHY
LGAKSRPAPYPLPGLRGHGYHPHAHPHAHPHHHHHPAVNPAAAAAAAAAANVYSSAAAPPGAYDYCPR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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