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Report for CCDS27983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27983.1 Public Mus musculus 16 Yars2 23 108 98 CCDS HistoryNCBI Gene:70120Re-query CCDS DB by CCDS ID:27983.1Re-query CCDS DB by GeneID:70120See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059955.14 ENSMUSP00000055277.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059955.14Link to Ensembl Protein Viewer:ENSMUSP00000055277.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000059955Re-query CCDS DB by Protein ID:ENSMUSP00000055277
Original member Current member NCBI NM_198246.2 NP_937889.1 Accepted alive Link to Nucleotide Sequence:NM_198246.2Link to Protein Sequence:NP_937889.1Re-query CCDS DB by Nucleotide ID:NM_198246Re-query CCDS DB by Protein ID:NP_937889Link to BLAST:NP_937889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937889.1 472 Q8BYL4 472 100% 0 0

Chromosomal Locations for CCDS 27983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16302984 16303747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16304536 16304703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16306463 16306618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16307210 16307380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16309332 16309491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCGGCGCCCATGCTGAGGCGCCTGTGCCGCGTTCCGCAGTCCCTGGTCTGGCTACGAGGGTCGCGTG
CGGTGCGCCCGGGCGCGCGGGGAATGCTGGTGGCACCGAGGGCCCGCGGCTTGTTCAAGGAGTTCTTCCC
CGAGAGCGGCACGAAGACAGAGCTCCCCGAACTCTTTGACCGCCGCAGGGCGGGCTCGTCCCCCCAGACG
GTGTACTGCGGCTTCGACCCCACGGGCGACTCGCTCCACGTGGGGCACCTGCTAACTCTGTTGGGGCTCT
TCCACTTCCAGCGAGCCGGCCACAACGTGATCGCGCTCGTGGGAGGCTCCACGGCCCTCCTGGGGGACCC
CAGCGGCCGGACCAAGGGGCGCGAGGCGCTGAGCGCCGAGTGCGTGCGGGCCAACGCGCACGCCCTGCGG
CGAGGGCTCGAGGCCCTGGCGGCCAACCACGCGCGCCTCTTCGCGGACGGCCGGCCCTGGGGCTCTTTCA
CGGTGCTGGACAACGCGGCCTGGTTCCAGGAGCAGCACCTGGTGGATTTCCTGGCCACGGTGGGCGGCCA
CTTCCGCATGGGCACTCTGCTGAGCCGGCTGAGCGTGCAGTCGCGTCTCAAGAGCCCCGAGGGCATGAGC
TTGGCGGAGTTCTTTTACCAGGTGCTCCAGGCCTATGACTTCTACTACCTTTTCCAGCACTATGGATGCC
GGGTCCAACTGGGCGGATCAGATCAGTTGGGCAACATCATGTCTGGCTACGAGTTCATCCACAAGTTGAC
TGGAGAGGATGTGTTTGGAATCACTGTACCTCTAATTACAAGTACAACTGGAGCAAAGCTGGGAAAGTCT
GCTGGCAATGCGGTTTGGCTAAACAGAGAGAAAACATCACCGTTTGAACTTTATCAGTTCTTTGTCAGAC
AGCAAGATGATTCCGTAGAAAGGTACCTGAAGCTTTTCACTTTCCTTCCCCTCCCAGAGATCGATCACAT
CATGCAGCTACATGTCAAAGAACCAGAAAAGCGAGTTGCTCAGAAACGACTTGCTGCAGAAGTAACAAAG
CTTGTTCACGGACAAGAAGGTCTGGACTCTGCTAAAAGGTGTACACAAGCCCTTTACCATAGCAGCATAG
AGGCACTGGAGGTCATGTCTGACCAAGAGTTAAAAGAATTGTTTAAAGAAGCTTCATTTTCTGAATTAGT
TCTTGATCCTGGAACGAGTGTCATAGACACATGCCGTAAAGCAAATGCCATTCCTGATGGCCCTCGAGGG
TATCGGATGATAACAGAAGGTGGAGTCAGTATAAATCACAGACAGGTAACAAATCCTGAAAGTGTTCTAG
TAATTGGACAACATATTCTCAAGAATGGACTTTCCTTACTTAAAATAGGAAAAAGGAATTTCTACATTAT
AAAATGGCTTCAGTTGTGA

Translation (472 aa):
MAAPMLRRLCRVPQSLVWLRGSRAVRPGARGMLVAPRARGLFKEFFPESGTKTELPELFDRRRAGSSPQT
VYCGFDPTGDSLHVGHLLTLLGLFHFQRAGHNVIALVGGSTALLGDPSGRTKGREALSAECVRANAHALR
RGLEALAANHARLFADGRPWGSFTVLDNAAWFQEQHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMS
LAEFFYQVLQAYDFYYLFQHYGCRVQLGGSDQLGNIMSGYEFIHKLTGEDVFGITVPLITSTTGAKLGKS
AGNAVWLNREKTSPFELYQFFVRQQDDSVERYLKLFTFLPLPEIDHIMQLHVKEPEKRVAQKRLAAEVTK
LVHGQEGLDSAKRCTQALYHSSIEALEVMSDQELKELFKEASFSELVLDPGTSVIDTCRKANAIPDGPRG
YRMITEGGVSINHRQVTNPESVLVIGQHILKNGLSLLKIGKRNFYIIKWLQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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