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Report for CCDS279.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
279.2 Public Homo sapiens 1 ZNF683 24 110 108 CCDS HistoryNCBI Gene:257101Re-query CCDS DB by CCDS ID:279.2Re-query CCDS DB by GeneID:257101See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 279.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349618.8 ENSP00000344095.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000349618.8Link to Ensembl Protein Viewer:ENSP00000344095.3Re-query CCDS DB by Nucleotide ID:ENST00000349618Re-query CCDS DB by Protein ID:ENSP00000344095
Original member Current member NCBI NM_001114759.3 NP_001108231.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114759.3Link to Protein Sequence:NP_001108231.1Re-query CCDS DB by Nucleotide ID:NM_001114759Re-query CCDS DB by Protein ID:NP_001108231Link to BLAST:NP_001108231.1
Original member Current member NCBI NM_173574.3 NP_775845.2 Accepted alive Link to Nucleotide Sequence:NM_173574.3Link to Protein Sequence:NP_775845.2Re-query CCDS DB by Nucleotide ID:NM_173574Re-query CCDS DB by Protein ID:NP_775845Link to BLAST:NP_775845.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108231.1 504 Q8IZ20-2 504 100% 0 0
NP_775845.2 504 Q8IZ20-2 504 100% 0 0

Chromosomal Locations for CCDS 279.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26361651 26362022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26363026 26363154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26364532 26365226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26367593 26367797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26368458 26368571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGAAGGAAGAATCAGCTGCACAATTAGGTTGTTGTCATAGGCCCATGGCCCTGGGAGGTACAGGGGGCT
CCCTGTCCCCCAGCCTGGACTTCCAGCTCTTCCGAGGTGACCAGGTCTTCTCAGCCTGCAGACCACTTCC
AGACATGGTGGATGCTCATGGCCCATCCTGTGCCAGCTGGCTGTGTCCCTTGCCCCTGGCACCGGGCAGG
TCTGCACTGCTGGCCTGCCTACAGGACCTGGACCTGAACCTGTGCACCCCACAGCCGGCACCCCTGGGCA
CAGACCTGCAGGGCCTCCAAGAGGACGCCTTGAGCATGAAGCACGAGCCACCAGGGCTGCAGGCCAGCTC
CACCGATGACAAGAAATTCACAGTCAAGTACCCACAGAACAAGGACAAGCTGGGAAAACAGCCAGAAAGA
GCTGGCGAGGGGGCCCCCTGCCCAGCCTTCTCCTCTCATAACAGCTCTTCCCCACCACCGCTGCAGAACA
GAAAGAGCCCCAGCCCCTTGGCTTTCTGCCCCTGTCCCCCTGTCAACTCCATCTCCAAGGAGCTCCCATT
TCTCCTCCACGCCTTCTACCCTGGATACCCACTTCTCCTGCCTCCACCCCACCTGTTCACCTATGGGGCC
CTACCTTCTGACCAATGTCCCCACCTCCTCATGCTGCCCCAAGACCCCTCCTACCCCACCATGGCTATGC
CTAGCCTGCTGATGATGGTCAATGAGCTGGGGCACCCCAGCGCTCGGTGGGAGACCCTGCTTCCCTACCC
AGGGGCCTTCCAAGCCTCTGGCCAAGCTCTGCCTTCCCAGGCCCGAAATCCAGGTGCTGGAGCTGCCCCA
ACCGACTCCCCAGGCCTGGAGCGTGGTGGCATGGCATCTCCAGCAAAGCGGGTCCCATTGAGTTCCCAGA
CAGGCACCGCAGCCTTGCCTTACCCGCTGAAAAAGAAGAATGGCAAAATCCTGTACGAGTGCAACATATG
TGGCAAGAGCTTTGGGCAGCTCTCCAATCTCAAGGTCCACCTGCGTGTGCACAGTGGAGAGCGTCCATTC
CAGTGTGCCTTGTGCCAGAAGAGCTTCACTCAACTTGCCCACCTGCAGAAGCACCACCTGGTGCACACTG
GGGAGCGGCCCCACAAGTGCTCGGTGTGCCACAAGCGCTTCAGCAGCTCCAGTAACCTCAAGACCCACCT
GCGCCTGCACTCCGGGGCCCGGCCCTTCCAGTGCAGTGTCTGCCGGAGTCGCTTCACCCAGCACATCCAC
CTGAAGCTGCACCATCGGCTGCATGCCCCACAGCCCTGTGGCCTGGTGCACACCCAGCTGCCCCTGGCCT
CTCTGGCCTGCCTTGCCCAATGGCACCAGGGGGCACTAGATCTTATGGCGGTGGCATCTGAGAAACACAT
GGGCTATGACATAGATGAGGTCAAAGTGTCCTCGACATCCCAGGGGAAAGCAAGAGCAGTGAGCCTGAGC
AGTGCCGGGACTCCCCTGGTGATGGGGCAGGACCAGAACAATTAA

Translation (504 aa):
MKEESAAQLGCCHRPMALGGTGGSLSPSLDFQLFRGDQVFSACRPLPDMVDAHGPSCASWLCPLPLAPGR
SALLACLQDLDLNLCTPQPAPLGTDLQGLQEDALSMKHEPPGLQASSTDDKKFTVKYPQNKDKLGKQPER
AGEGAPCPAFSSHNSSSPPPLQNRKSPSPLAFCPCPPVNSISKELPFLLHAFYPGYPLLLPPPHLFTYGA
LPSDQCPHLLMLPQDPSYPTMAMPSLLMMVNELGHPSARWETLLPYPGAFQASGQALPSQARNPGAGAAP
TDSPGLERGGMASPAKRVPLSSQTGTAALPYPLKKKNGKILYECNICGKSFGQLSNLKVHLRVHSGERPF
QCALCQKSFTQLAHLQKHHLVHTGERPHKCSVCHKRFSSSSNLKTHLRLHSGARPFQCSVCRSRFTQHIH
LKLHHRLHAPQPCGLVHTQLPLASLACLAQWHQGALDLMAVASEKHMGYDIDEVKVSSTSQGKARAVSLS
SAGTPLVMGQDQNN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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