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Report for CCDS27880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27880.1 Public Mus musculus 15 Aaas 23 108 98 CCDS HistoryNCBI Gene:223921Re-query CCDS DB by CCDS ID:27880.1Re-query CCDS DB by GeneID:223921See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041208.8 ENSMUSP00000044604.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041208.8Link to Ensembl Protein Viewer:ENSMUSP00000044604.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041208Re-query CCDS DB by Protein ID:ENSMUSP00000044604
Original member Current member NCBI NM_153416.2 NP_700465.2 Accepted alive Link to Nucleotide Sequence:NM_153416.2Link to Protein Sequence:NP_700465.2Re-query CCDS DB by Nucleotide ID:NM_153416Re-query CCDS DB by Protein ID:NP_700465Link to BLAST:NP_700465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700465.2 546 P58742 546 100% 0 0

Chromosomal Locations for CCDS 27880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102338281 102338505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102338641 102338725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102338817 102338898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102339186 102339253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102339325 102339418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102339531 102339621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102339764 102339824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102339944 102340068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102340331 102340451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102344089 102344232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102345577 102345675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102346487 102346533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102346678 102346769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102347036 102347091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102349953 102350080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102350496 102350618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGTGCTCCCTGGGGTTGTTCCCCCCGCCGCCGCCTAGAGGTCAAGTCACCCTGTATGAGCACAATAACG
AGCTGGTGACCGGCAACAGCTATGAGAGCCCGCCTCCCGACTTTCGGGGCCAGTGGATCAATCTTCCTGT
CCTACACCTGACCAAGGATCCCCTAAAAGCCCCAGGGAGGCTGGACCATGGTACAAGAACTGCCTTCATC
CATCACCGTGAGCAAGTGTGGAAGAGATGCATCAATGTTTGGCATGATGTGGGCCTTTTTGGCGTCCTGA
ATGAAATTGCGAATTCAGAGGAAGAAGTGTTTGAGTGGGTAAAGACAGCCTGCAGCTGGGCCCTGGCTCT
CTGTGGCCGCGCCTCCTCACTCCATGGCTCCCTGTTTCCACACCTCTCTCTCAGGAGTGAAGATCTGATT
GCTGAATTTGCCCAAGTAACTAACTGGTCCAGCTGCTGCTTACGGGTCTTTGCCTGGCATCCTCACACCA
ACAAGTTTGCAGTGGCCCTGCTGGACGACTCCATCCGTGTTTATAATGCCAACAGCACTATAGTTCCCTC
CCTGAAGCACCGTCTGCAGCGAAATGTAGCAGCCTTGGCCTGGAAGCCCCTCAGTGCCTCTGTCTTGGCT
GTGGCCTGCCAGAGCTGTATTCTCATCTGGACCCTAGACCCCACTTCCTTATCTACGAGACCCTCCTCTG
GCTGCGCCCAGGTGTTGTCTCACCCTGGGCACACACCAGTCACTAGCTTGGCTTGGGCCCCCAATGGGGG
GTGGCTGCTCTCAGCCTCACCTGTAGATGCTGTTATTCTGGTATGGGACGTTTCAACAGAGACTTGTGTC
CCCCTTCCTTGGTTCCGAGGAGGAGGGGTTACCAATCTGCTGTGGTCCCCAGATGGCAGCAAAGTCCTGG
CTACTACTCCTTCTGCCGTCTTTAGAGTCTGGGAGGCCCAGATGTGGACTTGTGAGGCGTGGCCAACTCT
TTCAGGGCGCTGCCAGACTGGCTGCTGGAGTCCAGATGGAAACCGACTGCTGTTCACTGTATTGGGGGAA
GCATTAATTTATTCCTTGTCATTCCCAGAACGATGTGGAACAGGGAAAGGACATGTTGGAGGTGCAAAGT
CAGCAACCATCGTAGCAGATCTTTCTGAGACAACAATTCAGACCCCAGATGGAGAGGAGAGACTCGGGGG
AGAGGCCCACTCCATGGTGTGGGACCCAAGTGGTGAACGTCTGGCTGTGCTCATGAAAGGAAACCCACAG
GTTCAGGACGGGAATCCTGTCATCCTCCTTTTTCGAACTCGAAACAGCCCCGTGTTTGAACTGCTTCCCT
GTGGTATTATTCAGGGGGAACCAGGAGCCCAAGCTCAGCTCATCACTTTCCATCCTTCCTTCAACAAAGG
GGCCTTGCTTAGTGTGTGCTGGTCCACAGGCCGAATCACCCACATACCTCTGTACTTTGTCAATGCTCAG
TTTCCACGCTTTAGCCCAGTACTTGGTCGAGCCCAGGAGCCTCCAGCTGGAGGGGGAGGCTCTATTCATG
AAGTGCCACTATTTACTGAGACATCACCAACCTCTGCTCCTTGGGACCCTCTTCCAGGACAATCATCTGC
TCAACCCCACTCCCCTCATTCCCACTTGTAA

Translation (546 aa):
MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQWINLPVLHLTKDPLKAPGRLDHGTRTAFI
HHREQVWKRCINVWHDVGLFGVLNEIANSEEEVFEWVKTACSWALALCGRASSLHGSLFPHLSLRSEDLI
AEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLA
VACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSASPVDAVILVWDVSTETCV
PLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGE
ALIYSLSFPERCGTGKGHVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPQ
VQDGNPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRITHIPLYFVNAQ
FPRFSPVLGRAQEPPAGGGGSIHEVPLFTETSPTSAPWDPLPGQSSAQPHSPHSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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