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Report for CCDS27857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27857.1 Public Mus musculus 15 Gm5414 23 108 98 CCDS HistoryNCBI Gene:406223Re-query CCDS DB by CCDS ID:27857.1Re-query CCDS DB by GeneID:406223See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062879.4 ENSMUSP00000059101.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062879.4Link to Ensembl Protein Viewer:ENSMUSP00000059101.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062879Re-query CCDS DB by Protein ID:ENSMUSP00000059101
Original member Current member NCBI NM_001003670.2 NP_001003670.1 Accepted alive Link to Nucleotide Sequence:NM_001003670.2Link to Protein Sequence:NP_001003670.1Re-query CCDS DB by Nucleotide ID:NM_001003670Re-query CCDS DB by Protein ID:NP_001003670Link to BLAST:NP_001003670.1

Chromosomal Locations for CCDS 27857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101624028 101624260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101624365 101624399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101624600 101624820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101624958 101625083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101625503 101625667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101625789 101625884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101626041 101626101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101626927 101627141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101627682 101628188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGTCGACCCAAACCACCATCAAGAGTCAAACCAGCCACTGTGGCTCCAGTGCCAGCTCAGCCAGAGTGC
CTGGGCTCAACCACTCTGGCTTCAGCTGTGTGTCTCTGTGCCAATCCCGGGGCATCAGTGGCTCTGGGCC
CATGTGTAGAGTAGCTAGCTTTGGCAGCAGGAGCCTCTACAGTGAGGGAAGCTCCAAGAGGATCTCCATT
GGAGGAAGCAGCTGTGGCAATAGGGAGTTCTATGGTAGACATTATGGGGGAGATCTTGGCATTGGAAGAG
GAGCCTGTGGTTGCTTTGGCTTTGGTGCTGGAGCTGGCTTTGGTGATGGCTATGGGGGAGCTGGCTTCCC
GGGATACCCATCTGGAGGTATTCAAGAGGTCACCATCAGCCAGAGCCTCCTCATCCCCCTGAACCTGCAA
ATCGACCCCACCATCCAGCGGGTCAGGACTGAGGAGAGGGAGCAGATCAAGACCCTCAACAACAGGTTTG
CCTCCTTCATTGACAAGGTGCAGTTCCTGGAGCAGCAGAACAAGGTCCTGGACACCAAGTGGGCCCTGCT
GCAGGAGCAGGGCACCAAGACTGTGAAGCCTGAGGTAGAGACTCTATTTGAGGATTACATTAACATCCTT
TCAAGACGGCTGGGCTTCACTGTTGCAGAGAAGGGTCACCTGGACGCAGAGCTGAGGAGAAGTCAGGGTG
TACTGGAGGACTACAAGTACAAATATGAAGATGAAATCAGCAAGCGCACAGCAGCAGAGAATGAATTCCT
GACCCTGAAGAAGGATGCAGATGCTGCTTTCATGATCGAGAATGAACTTACAGCCAAGGTCCACAGTTTG
ATAGATGAGATCAACTTCTTGAGGACTTTATTTGATGCTGAAATGTCTCAGATGCAAACTCCTCTCTCAG
ACACATCTGTGATTATCTCCATGGACAACAACCACAGCTTGGACATGGAGAGCATCATTGCTGAGGTCAA
GACACAATATGAGAACATTGCAAAGAAAAGTCAGGCTGAGGCTGAGTCTTGGTACCAGACTAAATATGAG
GAGCTGCAGGTCACAGCTGGCAGACATGGGGACGACCTGCGCAACACCAAGCAGGAGATTGCTGAGATCA
ACCGCATGATCCAGAGGCTAAGGTCTGAGATTGACCACGTTAAGAAGCAGTGTGCCAACCTGCAAGCTGC
TATTGCTGATGCTGAGCAACGTGGGGAGATGGCCCTGAAGGATGCCAGGGGCAAGCTGGAAGGGCTGAAG
GATGCCCCGCAGAAGGCAAAACAGGACAGGACCAGGCTGCAGAAGGAGTACCAGGAGCTCTTGAGTGTCA
ACATATACCTTGATGTGGAAATCACCACTTACAGGAAGCTGCTGGAGGGGGAGGAAAACAGGTTCAATGG
TGAAGGTATTGGACCAGTCAACATCTCTGTGGTGCCGTCCACTGGATCCAGCGGCTATGACAGTGCAGGT
GGTGCGAACAGAAACCATGGCCTGGGTGGAGGCAGCAGCCATTCCTATGGCAGGAATCATGGCCTTGGAG
GTGGCTTCAGCACTGGCAGAAGCAGAGGCATTGGGGGTGGCCTTGGCTCCTCTAGTGGCAGCTCTTCCAC
CATCAAATACACCACTACCTCCTCCAGCAGGAAGAGCAACAGGCACTGA

Translation (552 aa):
MSTQTTIKSQTSHCGSSASSARVPGLNHSGFSCVSLCQSRGISGSGPMCRVASFGSRSLYSEGSSKRISI
GGSSCGNREFYGRHYGGDLGIGRGACGCFGFGAGAGFGDGYGGAGFPGYPSGGIQEVTISQSLLIPLNLQ
IDPTIQRVRTEEREQIKTLNNRFASFIDKVQFLEQQNKVLDTKWALLQEQGTKTVKPEVETLFEDYINIL
SRRLGFTVAEKGHLDAELRRSQGVLEDYKYKYEDEISKRTAAENEFLTLKKDADAAFMIENELTAKVHSL
IDEINFLRTLFDAEMSQMQTPLSDTSVIISMDNNHSLDMESIIAEVKTQYENIAKKSQAEAESWYQTKYE
ELQVTAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMALKDARGKLEGLK
DAPQKAKQDRTRLQKEYQELLSVNIYLDVEITTYRKLLEGEENRFNGEGIGPVNISVVPSTGSSGYDSAG
GANRNHGLGGGSSHSYGRNHGLGGGFSTGRSRGIGGGLGSSSGSSSTIKYTTTSSSRKSNRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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